Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D4A37_RS07840 Genome accession   NZ_CP032365
Coordinates   1500034..1500636 (-) Length   200 a.a.
NCBI ID   WP_000155588.1    Uniprot ID   A0A2C5K6J7
Organism   Bacillus wiedmannii strain SR52     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1495034..1505636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS07820 dnaD 1495345..1496052 (+) 708 WP_000728534.1 DNA replication protein DnaD -
  D4A37_RS07825 nth 1496068..1496715 (+) 648 WP_046958931.1 endonuclease III -
  D4A37_RS07830 - 1496719..1497252 (+) 534 WP_151035352.1 YpoC family protein -
  D4A37_RS07835 - 1497277..1499967 (-) 2691 WP_151035353.1 PBP1A family penicillin-binding protein -
  D4A37_RS07840 recU 1500034..1500636 (-) 603 WP_000155588.1 Holliday junction resolvase RecU Machinery gene
  D4A37_RS07845 - 1500740..1501765 (+) 1026 WP_002108635.1 DUF2515 domain-containing protein -
  D4A37_RS29810 - 1502075..1502251 (-) 177 WP_001982922.1 hypothetical protein -
  D4A37_RS07850 - 1502337..1502579 (+) 243 WP_001252042.1 hypothetical protein -
  D4A37_RS07855 - 1502595..1502939 (+) 345 WP_000872967.1 YppE family protein -
  D4A37_RS07860 - 1502965..1503156 (-) 192 WP_000242661.1 YppF family protein -
  D4A37_RS07865 - 1503334..1503858 (+) 525 WP_061672435.1 YppG family protein -
  D4A37_RS07870 - 1504014..1504424 (+) 411 WP_046955205.1 CotD family spore coat protein -
  D4A37_RS07875 - 1504481..1505035 (+) 555 WP_048543489.1 DUF1273 domain-containing protein -
  D4A37_RS07880 gpsB 1505133..1505471 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23289.64 Da        Isoelectric Point: 9.6725

>NTDB_id=315194 D4A37_RS07840 WP_000155588.1 1500034..1500636(-) (recU) [Bacillus wiedmannii strain SR52]
MTIRYPNGKRYNQASLPPKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGVAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NNGGRKSITKEEIEVHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=315194 D4A37_RS07840 WP_000155588.1 1500034..1500636(-) (recU) [Bacillus wiedmannii strain SR52]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACTACCTCCTAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACGGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAGGAAACAAAAAACAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAGTTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTCGATGCGAAACATATTATTGCATTTTGGAACCGTCAA
AATAATGGTGGGCGTAAGTCAATTACGAAAGAAGAAATAGAAGTGCATGGATCATTGTTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C5K6J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment