Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D4A37_RS06535 Genome accession   NZ_CP032365
Coordinates   1257734..1258057 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain SR52     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1252734..1263057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS06505 - 1252754..1252981 (+) 228 WP_000251865.1 hypothetical protein -
  D4A37_RS06510 - 1253137..1254423 (+) 1287 WP_000245998.1 D-alanyl-D-alanine carboxypeptidase family protein -
  D4A37_RS06515 - 1254626..1255195 (+) 570 WP_033658782.1 signal peptidase I -
  D4A37_RS06520 - 1255258..1255845 (+) 588 WP_000172829.1 CalY family protein -
  D4A37_RS06525 - 1255965..1256762 (+) 798 WP_151035339.1 DUF4047 domain-containing protein -
  D4A37_RS06530 calY 1257065..1257658 (+) 594 WP_000053728.1 biofilm matrix protein CalY -
  D4A37_RS06535 sinR 1257734..1258057 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  D4A37_RS06540 - 1258137..1258271 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  D4A37_RS06545 inhA1 1258614..1261001 (+) 2388 WP_001035922.1 M6 family metalloprotease immune inhibitor InhA1 -
  D4A37_RS06550 - 1261173..1262540 (+) 1368 WP_064473101.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=315192 D4A37_RS06535 WP_000578882.1 1257734..1258057(-) (sinR) [Bacillus wiedmannii strain SR52]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=315192 D4A37_RS06535 WP_000578882.1 1257734..1258057(-) (sinR) [Bacillus wiedmannii strain SR52]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAGCTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGACACTCTACTTCATGATGAAACAACAAAGGAAAATCATTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment