Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D4A37_RS00220 Genome accession   NZ_CP032365
Coordinates   40431..40715 (-) Length   94 a.a.
NCBI ID   WP_000843039.1    Uniprot ID   A0A0G8F3L7
Organism   Bacillus wiedmannii strain SR52     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35431..45715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS00185 tmk 35581..36207 (+) 627 WP_000677225.1 dTMP kinase -
  D4A37_RS00190 holB 36243..37226 (+) 984 WP_000169566.1 DNA polymerase III subunit delta' -
  D4A37_RS00195 - 37232..38059 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  D4A37_RS00200 yabA 38074..38427 (+) 354 WP_000412057.1 DNA replication initiation control protein YabA -
  D4A37_RS00205 - 38549..39289 (+) 741 WP_001055376.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D4A37_RS00210 - 39276..39566 (+) 291 WP_000414343.1 GIY-YIG nuclease family protein -
  D4A37_RS00215 rsmI 39535..40410 (+) 876 WP_000267813.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D4A37_RS00220 abrB 40431..40715 (-) 285 WP_000843039.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D4A37_RS00225 metG 41237..43219 (+) 1983 WP_000134154.1 methionine--tRNA ligase -
  D4A37_RS00230 - 43386..44153 (+) 768 WP_000895837.1 TatD family hydrolase -
  D4A37_RS00235 rnmV 44348..44905 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10518.23 Da        Isoelectric Point: 4.9229

>NTDB_id=315175 D4A37_RS00220 WP_000843039.1 40431..40715(-) (abrB) [Bacillus wiedmannii strain SR52]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
RILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=315175 D4A37_RS00220 WP_000843039.1 40431..40715(-) (abrB) [Bacillus wiedmannii strain SR52]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CGAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8F3L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84

Multiple sequence alignment