Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   D4A37_RS00020 Genome accession   NZ_CP032365
Coordinates   3012..4139 (+) Length   375 a.a.
NCBI ID   WP_000470742.1    Uniprot ID   A0A0G8EXU4
Organism   Bacillus wiedmannii strain SR52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4A37_RS00005 dnaA 1..1341 (+) 1341 WP_000428027.1 chromosomal replication initiator protein DnaA -
  D4A37_RS00010 dnaN 1520..2659 (+) 1140 WP_001212890.1 DNA polymerase III subunit beta -
  D4A37_RS00015 yaaA 2787..2999 (+) 213 WP_000821366.1 S4 domain-containing protein YaaA -
  D4A37_RS00020 recF 3012..4139 (+) 1128 WP_000470742.1 DNA replication/repair protein RecF Machinery gene
  D4A37_RS00025 gyrB 4178..6100 (+) 1923 WP_000435974.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  D4A37_RS00030 gyrA 6189..8660 (+) 2472 WP_001282860.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43377.74 Da        Isoelectric Point: 6.7809

>NTDB_id=315173 D4A37_RS00020 WP_000470742.1 3012..4139(+) (recF) [Bacillus wiedmannii strain SR52]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=315173 D4A37_RS00020 WP_000470742.1 3012..4139(+) (recF) [Bacillus wiedmannii strain SR52]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
GATTATCGGTGAAAACGCACAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGACTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGTATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCAATCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGCGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8EXU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment