Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D4N21_RS19955 Genome accession   NZ_CP032354
Coordinates   3984517..3985113 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain 15WZ-82     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3979517..3990113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4N21_RS19940 (D4N21_20015) helD 3979725..3981779 (-) 2055 WP_128205961.1 DNA helicase IV -
  D4N21_RS19945 (D4N21_20020) - 3981904..3982350 (+) 447 WP_008805896.1 YccF domain-containing protein -
  D4N21_RS19950 (D4N21_20025) yccS 3982368..3984503 (+) 2136 WP_008805895.1 YccS family putative transporter -
  D4N21_RS19955 (D4N21_20030) sxy/tfoX 3984517..3985113 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  D4N21_RS19965 (D4N21_20040) sulA 3985464..3985973 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  D4N21_RS19970 (D4N21_20045) ompA 3986326..3987378 (+) 1053 WP_008805892.1 porin OmpA -
  D4N21_RS19975 (D4N21_20050) matP 3987489..3987941 (-) 453 WP_012542298.1 macrodomain Ter protein MatP -
  D4N21_RS19980 (D4N21_20055) - 3988127..3989884 (+) 1758 WP_012968609.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=315108 D4N21_RS19955 WP_012542296.1 3984517..3985113(-) (sxy/tfoX) [Klebsiella variicola strain 15WZ-82]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=315108 D4N21_RS19955 WP_012542296.1 3984517..3985113(-) (sxy/tfoX) [Klebsiella variicola strain 15WZ-82]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTATCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment