Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SaO322_RS07625 Genome accession   NZ_CP038460
Coordinates   1532129..1533808 (-) Length   559 a.a.
NCBI ID   WP_118848115.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1527129..1538808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO322_RS07605 (SaO322_01402) - 1527279..1528553 (-) 1275 WP_000406850.1 dihydrolipoamide acetyltransferase family protein -
  SaO322_RS07610 (SaO322_01403) - 1528566..1529549 (-) 984 WP_001096640.1 alpha-ketoacid dehydrogenase subunit beta -
  SaO322_RS07615 (SaO322_01404) - 1529549..1530541 (-) 993 WP_000568355.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  SaO322_RS07620 (SaO322_01405) lpdA 1530557..1531978 (-) 1422 WP_001291537.1 dihydrolipoyl dehydrogenase -
  SaO322_RS07625 (SaO322_01406) recN 1532129..1533808 (-) 1680 WP_118848115.1 DNA repair protein RecN Machinery gene
  SaO322_RS07630 (SaO322_01407) argR 1533824..1534276 (-) 453 WP_001124985.1 transcriptional regulator ArgR -
  SaO322_RS07635 (SaO322_01408) - 1534707..1535588 (-) 882 WP_000183372.1 polyprenyl synthetase family protein -
  SaO322_RS07640 (SaO322_01409) - 1535566..1535796 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  SaO322_RS07645 (SaO322_01410) xseA 1535789..1537126 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  SaO322_RS07650 (SaO322_01411) nusB 1537143..1537532 (-) 390 WP_118848116.1 transcription antitermination factor NusB -
  SaO322_RS07655 (SaO322_01412) - 1537592..1537954 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64279.87 Da        Isoelectric Point: 4.7316

>NTDB_id=315073 SaO322_RS07625 WP_118848115.1 1532129..1533808(-) (recN) [Staphylococcus aureus strain B119]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDLDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=315073 SaO322_RS07625 WP_118848115.1 1532129..1533808(-) (recN) [Staphylococcus aureus strain B119]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATTTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAATCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGTATTCAAAACTCTGAAAAATTAAGTTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCTAAGCAGCGTCGTATAGTTG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGATGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATATCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.058

100

0.438