Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D3Y59_RS13205 Genome accession   NZ_CP032317
Coordinates   3085936..3087321 (+) Length   461 a.a.
NCBI ID   WP_119445475.1    Uniprot ID   A0A3B7RUC2
Organism   Hymenobacter oligotrophus strain sh-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3080936..3092321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Y59_RS13190 (D3Y59_13190) - 3081422..3082237 (-) 816 WP_240410366.1 metallophosphoesterase -
  D3Y59_RS13195 (D3Y59_13195) - 3082463..3084124 (-) 1662 WP_119445473.1 FAD-dependent oxidoreductase -
  D3Y59_RS13200 (D3Y59_13200) - 3084251..3085654 (-) 1404 WP_119445474.1 sensor histidine kinase -
  D3Y59_RS13205 (D3Y59_13205) radA 3085936..3087321 (+) 1386 WP_119445475.1 DNA repair protein RadA Machinery gene
  D3Y59_RS13210 (D3Y59_13210) - 3087527..3088993 (+) 1467 WP_119445476.1 TlpA disulfide reductase family protein -
  D3Y59_RS13215 (D3Y59_13215) - 3089271..3090293 (+) 1023 WP_119445477.1 SPASM domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49919.33 Da        Isoelectric Point: 6.5034

>NTDB_id=314998 D3Y59_RS13205 WP_119445475.1 3085936..3087321(+) (radA) [Hymenobacter oligotrophus strain sh-6]
MAKIKTLYFCQTCGAQSAKWIGRCPSCGEWNTYVEEVIQKEEITPATAWKASTSVGGTSKAAKPKALGEILYEEESRLDT
HDGELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMQLKNLRILYVSGEESEQQIKMRAERLGRQHQGLYILTETSTQ
NIFKQIDALQPNVVVVDSIQTLHSQLVESGAGSVSQVRECTTELLKYAKDTGVPVLLIGHITKDGSIAGPKILEHMVDTV
LQFEGDRHLTYRILRTIKNRFGSTAELGIYEMQGAGLRQVSNPSEILLSQRAETLSGIAIGATLEGNRPLLVEVQALVTP
ATYGTPQRSSTGFDSKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDAAVCAAVVSSLNDIPVPGDVCLAAEV
GLSGEIRAVSRLDQRLSEAEKLGFREMYISQFNGRGLDLGRFGLKVHPVARLDEVLSGLFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=314998 D3Y59_RS13205 WP_119445475.1 3085936..3087321(+) (radA) [Hymenobacter oligotrophus strain sh-6]
ATGGCCAAAATCAAGACCCTTTATTTCTGCCAAACGTGCGGCGCGCAATCGGCTAAGTGGATTGGGCGCTGCCCCTCTTG
CGGCGAGTGGAATACCTACGTCGAGGAAGTTATCCAGAAAGAAGAAATTACCCCGGCCACTGCCTGGAAAGCTTCTACCT
CGGTGGGCGGCACCAGCAAAGCGGCCAAGCCCAAGGCCCTAGGTGAAATCCTGTACGAAGAGGAATCGCGCCTCGACACC
CACGACGGCGAGCTGAACCGCGTGCTGGGCGGCGGCTTGGTGCCGGGCTCGTTGGTGCTCATCGGCGGCGAGCCGGGCAT
TGGCAAAAGCACCCTGATGCTGCAAATTGCCATGCAGCTCAAGAACTTGCGCATCTTGTACGTATCGGGGGAGGAAAGCG
AGCAGCAGATAAAAATGCGCGCCGAGCGCCTGGGCCGGCAGCACCAGGGCCTCTACATCCTCACCGAAACCAGCACGCAA
AACATCTTCAAGCAGATTGATGCGCTGCAGCCCAACGTGGTGGTGGTCGACTCCATCCAAACCTTGCACTCGCAGTTGGT
CGAGTCGGGGGCGGGCTCGGTAAGCCAGGTGCGCGAGTGCACCACCGAGCTGCTGAAGTACGCCAAAGACACCGGCGTGC
CGGTGCTGCTCATCGGCCATATTACCAAGGATGGCTCCATCGCCGGCCCCAAAATTTTGGAGCACATGGTGGATACCGTG
CTGCAGTTTGAGGGCGACCGGCACCTCACCTACCGCATACTTCGCACCATTAAAAACCGCTTTGGCTCCACGGCCGAGCT
GGGCATTTACGAAATGCAAGGCGCAGGCTTGCGGCAAGTGTCGAACCCGTCGGAGATTTTGCTTAGCCAGCGCGCCGAAA
CCCTGAGCGGCATTGCCATTGGCGCCACGCTCGAGGGCAACCGCCCCCTGCTAGTGGAGGTGCAGGCCCTGGTAACGCCT
GCTACCTACGGCACGCCCCAGCGCAGCAGCACCGGCTTCGACAGCAAGCGCCTGCAAATGCTGCTGGCCGTGCTGGAGAA
GCGTAGCGGCTTGCGCCTGGGCCAGCACGATGTGTTTTTGAACATTGCCGGCGGCCTGCGCCTCGAAGATCCTGCCCTCG
ATGCGGCCGTGTGCGCGGCCGTGGTATCGTCGCTGAACGACATTCCGGTGCCCGGCGACGTGTGCCTGGCGGCCGAGGTG
GGCTTGAGCGGCGAAATCAGGGCGGTATCGCGCTTGGATCAGCGTTTGTCGGAGGCCGAGAAGCTAGGTTTCCGCGAGAT
GTACATCTCTCAATTCAACGGGCGCGGCCTCGACCTAGGGCGGTTTGGACTAAAGGTGCACCCGGTTGCACGTCTCGACG
AAGTTCTCAGCGGGCTGTTCGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(367-457)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7RUC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.293

100

0.516
  radA Streptococcus pneumoniae Rx1

48.701

100

0.488
  radA Streptococcus pneumoniae D39

48.701

100

0.488
  radA Streptococcus pneumoniae R6

48.701

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.701

100

0.488
  radA Streptococcus mitis NCTC 12261

48.485

100

0.486
  radA Streptococcus mitis SK321

48.485

100

0.486

Multiple sequence alignment