Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D3Z18_RS07890 Genome accession   NZ_CP032316
Coordinates   1440785..1441735 (+) Length   316 a.a.
NCBI ID   WP_002884485.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1426564..1454724 1440785..1441735 within 0


Gene organization within MGE regions


Location: 1426564..1454724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS07820 (D3Z18_07820) pglI 1426564..1427490 (-) 927 WP_038401442.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  D3Z18_RS07825 (D3Z18_07825) pglH 1427483..1428562 (-) 1080 WP_079460137.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  D3Z18_RS07830 (D3Z18_07830) pglK 1428559..1430253 (-) 1695 WP_038401446.1 ABC-type lipopolysaccharide transporter PglK -
  D3Z18_RS07835 (D3Z18_07835) galE 1430247..1431233 (-) 987 WP_002874249.1 UDP-glucose 4-epimerase GalE -
  D3Z18_RS07840 (D3Z18_07840) - 1431292..1432086 (-) 795 WP_002860221.1 3'-5' exonuclease -
  D3Z18_RS07845 (D3Z18_07845) waaC 1432153..1433181 (+) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  D3Z18_RS07850 (D3Z18_07850) htrB 1433171..1434058 (+) 888 WP_038401448.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  D3Z18_RS07855 (D3Z18_07855) - 1434055..1434810 (+) 756 Protein_1525 glycosyltransferase family 2 protein -
  D3Z18_RS07860 (D3Z18_07860) - 1434815..1435875 (+) 1061 Protein_1526 glycosyltransferase family 4 protein -
  D3Z18_RS07865 (D3Z18_07865) - 1436044..1436733 (-) 690 WP_251822095.1 glycosyltransferase family 2 protein -
  D3Z18_RS07870 (D3Z18_07870) - 1436726..1437934 (-) 1209 WP_038401456.1 glycosyltransferase family 2 protein -
  D3Z18_RS07875 (D3Z18_07875) - 1438012..1438983 (-) 972 WP_011049888.1 glycosyltransferase -
  D3Z18_RS07880 (D3Z18_07880) - 1438976..1439862 (-) 887 Protein_1530 glycosyltransferase -
  D3Z18_RS07885 (D3Z18_07885) waaV 1439916..1440726 (-) 811 Protein_1531 glycosyltransferase family 2 protein -
  D3Z18_RS07890 (D3Z18_07890) waaF 1440785..1441735 (+) 951 WP_002884485.1 lipopolysaccharide heptosyltransferase II Regulator
  D3Z18_RS07895 (D3Z18_07895) - 1441721..1442485 (-) 765 WP_038401458.1 glycosyltransferase family 25 protein -
  D3Z18_RS07900 (D3Z18_07900) gmhA 1442485..1443045 (-) 561 WP_038401460.1 D-sedoheptulose 7-phosphate isomerase -
  D3Z18_RS07905 (D3Z18_07905) rfaE1 1443042..1444427 (-) 1386 WP_038401463.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  D3Z18_RS07910 (D3Z18_07910) rfaD 1444420..1445373 (-) 954 WP_038401465.1 ADP-glyceromanno-heptose 6-epimerase -
  D3Z18_RS07915 (D3Z18_07915) gmhB 1445374..1445935 (-) 562 Protein_1537 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  D3Z18_RS07920 (D3Z18_07920) - 1446016..1446318 (+) 303 WP_002852762.1 cytochrome c -
  D3Z18_RS07925 (D3Z18_07925) ccoS 1446341..1446547 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D3Z18_RS07930 (D3Z18_07930) - 1446544..1448901 (-) 2358 WP_074471057.1 heavy metal translocating P-type ATPase -
  D3Z18_RS07935 (D3Z18_07935) rho 1449010..1450308 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  D3Z18_RS07940 (D3Z18_07940) dnaX 1450312..1451841 (+) 1530 WP_002860245.1 DNA polymerase III subunit gamma/tau -
  D3Z18_RS07945 (D3Z18_07945) - 1451838..1452359 (-) 522 WP_002853472.1 DUF2165 family protein -
  D3Z18_RS07950 (D3Z18_07950) copA 1452431..1454530 (-) 2100 WP_038401468.1 copper-translocating P-type ATPase CopA -
  D3Z18_RS07955 (D3Z18_07955) - 1454530..1454724 (-) 195 WP_002902625.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36240.79 Da        Isoelectric Point: 10.2878

>NTDB_id=314986 D3Z18_RS07890 WP_002884485.1 1440785..1441735(+) (waaF) [Campylobacter jejuni subsp. jejuni strain HPC5]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGNAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=314986 D3Z18_RS07890 WP_002884485.1 1440785..1441735(+) (waaF) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAATGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.332

99.051

0.915

Multiple sequence alignment