Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E4Z89_RS08900 Genome accession   NZ_CP038453
Coordinates   1861969..1863396 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain EC-129     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856969..1868396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z89_RS08870 (E4Z89_08900) yeeZ 1857024..1857848 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E4Z89_RS08875 (E4Z89_08905) yeeY 1857894..1858823 (+) 930 WP_024195433.1 LysR substrate-binding domain-containing protein -
  E4Z89_RS08880 (E4Z89_08910) yoeI 1859038..1859100 (+) 63 WP_010723108.1 membrane protein YoeI -
  E4Z89_RS08885 (E4Z89_08915) plaP 1859090..1860448 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E4Z89_RS08890 (E4Z89_08920) tsuA 1860627..1861685 (+) 1059 WP_000492321.1 thiosulfate utilization transporter TsuA/YeeE -
  E4Z89_RS08895 (E4Z89_08925) tsuB 1861699..1861926 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E4Z89_RS08900 (E4Z89_08930) sbcB 1861969..1863396 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  E4Z89_RS08905 (E4Z89_08935) dacD 1863605..1864771 (+) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E4Z89_RS08910 (E4Z89_08940) sbmC 1864890..1865363 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  E4Z89_RS08915 (E4Z89_08945) yeeA 1865561..1866619 (+) 1059 WP_001200895.1 FUSC family protein -
  E4Z89_RS08920 (E4Z89_08950) tmaR 1866791..1867120 (+) 330 WP_000450409.1 DUF496 family protein -
  E4Z89_RS26940 - 1867221..1867586 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -
  E4Z89_RS26730 - 1867857..1868228 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=314977 E4Z89_RS08900 WP_000980603.1 1861969..1863396(-) (sbcB) [Escherichia coli strain EC-129]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=314977 E4Z89_RS08900 WP_000980603.1 1861969..1863396(-) (sbcB) [Escherichia coli strain EC-129]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581