Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D3Z90_RS23245 Genome accession   NZ_CP032311
Coordinates   5055867..5057234 (-) Length   455 a.a.
NCBI ID   WP_136478233.1    Uniprot ID   -
Organism   Pseudomonas sp. DG56-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5050867..5062234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z90_RS23225 - 5051184..5051381 (-) 198 WP_136478229.1 YbdD/YjiX family protein -
  D3Z90_RS23230 - 5051400..5053466 (-) 2067 WP_136478230.1 carbon starvation CstA family protein -
  D3Z90_RS23235 - 5053649..5054014 (+) 366 WP_136478231.1 PilZ domain-containing protein -
  D3Z90_RS23240 - 5054275..5055795 (+) 1521 WP_136478232.1 nucleobase:cation symporter-2 family protein -
  D3Z90_RS23245 radA 5055867..5057234 (-) 1368 WP_136478233.1 DNA repair protein RadA Machinery gene
  D3Z90_RS23250 mscL 5057410..5057823 (+) 414 WP_136478234.1 large-conductance mechanosensitive channel protein MscL -
  D3Z90_RS23255 - 5057873..5058649 (-) 777 WP_136478235.1 ferredoxin--NADP reductase -
  D3Z90_RS23260 - 5058889..5059596 (+) 708 WP_136478236.1 autoinducer binding domain-containing protein -
  D3Z90_RS23265 - 5059684..5060808 (+) 1125 WP_136478237.1 methyltransferase -
  D3Z90_RS23270 - 5062018..5062173 (-) 156 WP_136478238.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48688.17 Da        Isoelectric Point: 6.8313

>NTDB_id=314952 D3Z90_RS23245 WP_136478233.1 5055867..5057234(-) (radA) [Pseudomonas sp. DG56-2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVLESGAAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIMSSLRNRPLDNGLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=314952 D3Z90_RS23245 WP_136478233.1 5055867..5057234(-) (radA) [Pseudomonas sp. DG56-2]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAATGCGGCGCGACCTTTCCTAAATGGGCAGGGCAGTGCGGCGAGTG
CGGTGCCTGGAACACCCTGGTCGAGACCGTACTGGAGAGCGGCGCCGCCGCAGCGCCCAGTGGACGTACCGGCTGGGCGG
GGCAGCAAGCCCAGATCAAGACCCTGGCCGAAGTCAGTATCGAAGAAATTCCACGGTTCAGTACCGCCAGCGCAGAACTG
GACCGTGTGCTAGGCGGTGGTTTGGTCGACGGTTCGGTGGTGCTGATCGGTGGTGATCCGGGCATCGGCAAGTCCACTAT
CCTCCTGCAAACCCTGTGTGCCATCGCTACCCGTATGCCGGCACTGTACGTCACGGGGGAAGAGTCACAACAACAAGTCG
CGATGCGAGCGCGGCGCCTGGGCTTGCCCCAGGATCAGTTGCGAGTGATGACCGAGACCTGCATCGAGACCATCATCGCC
ACTGCCCGATTGGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTTACCGAACAGTTGCAGTCGGCACC
CGGCGGTGTATCCCAGGTGCGCGAGAGTGCAGCCTTGTTGGTGCGTTACGCCAAGCAGAGTGGCACGGCCATCTTCCTCG
TGGGTCACGTTACCAAGGAGGGTGCACTGGCTGGGCCGCGCGTACTGGAACACATGGTCGATACGGTGTTGTATTTCGAG
GGCGAGTCCGATGGACGCCTGCGATTGTTGCGAGCGGTGAAAAACCGTTTCGGCGCAGTCAACGAACTGGGTGTATTCGG
TATGACTGACCGTGGTTTGAAGGAGGTTTCCAACCCTTCGGCGATCTTCCTGACCCGAGCCCAGGAAGAGGTGCCCGGCA
GCGTCGTGATGGCGACGTGGGAGGGCACTCGGCCAATGCTGGTGGAAGTCCAGGCACTGGTTGACGACAGCCACCTGTCC
AACCCGCGGCGGGTCACCTTGGGTCTGGACCAGAATCGCCTGGCCATGCTCTTGGCGGTCCTGCACCGGCATGGTGGTAT
TCCCACCCATGATCAGGATGTCTTTCTCAACGTGGTCGGTGGGGTCAAGGTGCTGGAAACGGCATCCGATCTGGCGCTGA
TGGCGGCGATCATGTCCAGTTTGCGCAATCGTCCGCTGGACAACGGCCTGCTGGTTTTTGGTGAAGTGGGGCTGTCTGGG
GAGGTACGCCCCGTGCCCAGTGGGCAGGAGCGCCTGAAGGAAGCGGCCAAGCATGGTTTCAAGCGCGCCATCGTACCCAA
GGGCAATGCACCGAAGGAGTCACCACCAGGGTTGCAGGTAATTGCGGTAACCCGGCTGGAACAGGCGCTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus mitis SK321

46.813

100

0.468
  radA Streptococcus mitis NCTC 12261

46.593

100

0.466
  radA Streptococcus pneumoniae Rx1

46.593

100

0.466
  radA Streptococcus pneumoniae D39

46.593

100

0.466
  radA Streptococcus pneumoniae R6

46.593

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.593

100

0.466

Multiple sequence alignment