Detailed information NTG0314932

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: D3Z87_RS20405
• Genome accession: NZ_CP032310
• Coordinates: 3845627..3846772 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain WB800N
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3840627..3851772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3Z87_RS20380 (D3Z87_20205)	albF	3840643..3841923 (+)	1281	WP_003242974.1	pitrilysin family protein	-
D3Z87_RS20385 (D3Z87_20210)	albG	3841920..3842621 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
D3Z87_RS20390 (D3Z87_20215)	ywhL	3842627..3844003 (-)	1377	WP_003244415.1	YncE family protein	-
D3Z87_RS20395 (D3Z87_20220)	ywhK	3844042..3845397 (-)	1356	WP_003227552.1	YncE family protein	-
D3Z87_RS22660 (D3Z87_20225)	-	3845394..3845624 (-)	231	WP_009968328.1	hypothetical protein	-
D3Z87_RS20405 (D3Z87_20230)	rapF	3845627..3846772 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
D3Z87_RS20410 (D3Z87_20235)	phrF	3846756..3846875 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
D3Z87_RS20415 (D3Z87_20240)	ywhH	3846974..3847447 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
D3Z87_RS20420 (D3Z87_20245)	speB	3847479..3848351 (-)	873	WP_003227545.1	agmatinase	-
D3Z87_RS20425 (D3Z87_20250)	speE	3848412..3849242 (-)	831	WP_003227543.1	spermidine synthase	-
D3Z87_RS20430 (D3Z87_20255)	pbpG	3849444..3851519 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=314932 D3Z87_RS20405 WP_003227549.1 3845627..3846772(+) (rapF) [Bacillus subtilis strain WB800N]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=314932 D3Z87_RS20405 WP_003227549.1 3845627..3846772(+) (rapF) [Bacillus subtilis strain WB800N]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572