Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E4T63_RS21675 Genome accession   NZ_CP038438
Coordinates   4692871..4694301 (-) Length   476 a.a.
NCBI ID   WP_098965286.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain LBUM677     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4687871..4699301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS21650 (E4T63_21650) - 4688099..4689190 (+) 1092 WP_177416215.1 glycosyltransferase family 1 protein -
  E4T63_RS21655 (E4T63_21655) - 4689183..4689959 (+) 777 WP_135296431.1 DUF2334 domain-containing protein -
  E4T63_RS21660 (E4T63_21660) - 4689956..4690975 (+) 1020 WP_096795101.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  E4T63_RS28570 - 4690938..4691114 (-) 177 WP_167797083.1 hypothetical protein -
  E4T63_RS21665 (E4T63_21665) purU 4691203..4692051 (-) 849 WP_003227580.1 formyltetrahydrofolate deformylase -
  E4T63_RS21670 (E4T63_21670) mvaT 4692390..4692767 (+) 378 WP_003227581.1 histone-like nucleoid-structuring protein MvaT -
  E4T63_RS21675 (E4T63_21675) sbcB 4692871..4694301 (-) 1431 WP_098965286.1 exodeoxyribonuclease I Machinery gene
  E4T63_RS21680 (E4T63_21680) - 4694483..4695208 (+) 726 WP_098965287.1 RDD family protein -
  E4T63_RS21685 (E4T63_21685) - 4695205..4696182 (+) 978 WP_098968447.1 stage II sporulation protein M -
  E4T63_RS21690 (E4T63_21690) - 4696169..4697716 (+) 1548 WP_098965288.1 DUF4129 domain-containing protein -
  E4T63_RS21695 (E4T63_21695) - 4697713..4698876 (+) 1164 WP_098965290.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54798.93 Da        Isoelectric Point: 5.6216

>NTDB_id=314906 E4T63_RS21675 WP_098965286.1 4692871..4694301(-) (sbcB) [Pseudomonas fluorescens strain LBUM677]
MTSIFWYDYETTGINPRNDRPLQVAGIRTDHDLNEIDEPVNLYCQPSDDILPHPAACAITGITPSCLAEQGLSEADFMTR
VHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLE
RLTAANHIDHGHAHEALSDVRATIALARLIREKQPKLYDWLFQLRSKQKVMDQIRLLQPLVHISGRFSAARHYVGVVLPL
AWHPRNRNALIVCDLHLDPQGLLDLDAETLRRRLYTRRDDLAEGELPVPLKLIHINRCPVVAPLSVLRADDQQRLGLDMA
LYQARALRLSDAQQVWKDKVAAIYASEDFTPSEDPEQQLYDGFIGDRDRRLCEQVRTADPAQLAQEHWPFDDERLPELLF
RYRARNFPDTLNFEEQERWRIFCQQRLSEPQMGAPNTLQSFAEAAQQWALSATPIQNQVLNEWQNYVQALRKRLNL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=314906 E4T63_RS21675 WP_098965286.1 4692871..4694301(-) (sbcB) [Pseudomonas fluorescens strain LBUM677]
GTGACTTCAATCTTCTGGTACGACTACGAGACCACCGGCATCAATCCGCGCAACGACCGTCCGCTGCAGGTCGCCGGGAT
TCGCACCGACCACGACCTCAATGAAATCGACGAACCGGTCAACCTCTACTGCCAGCCCAGCGACGACATCCTGCCGCACC
CGGCGGCGTGCGCCATTACCGGTATCACCCCGAGCTGTCTCGCCGAACAGGGTTTGAGCGAAGCCGACTTCATGACCCGC
GTACACGCGCAACTGGCGGCGCCCGGCACTTGCGGTGCGGGTTACAACACCTTGCGTTTCGACGACGAGATGACCCGCTA
CAGCCTGTACCGCAACTTCTTCGACCCGTATGCCCGCGAGTGGCAGGGCGGCAACAGTCGCTGGGACCTGATCGATGTGG
TGCGCGCCGCGTATGCGTTGCGCCCGGATGGCCTGGTCTGGCCGACCGACGACGAAGGCAAGGTCACCCTCAAGCTCGAA
CGCCTGACGGCGGCCAACCACATCGACCATGGGCATGCGCACGAAGCGCTCTCGGACGTGCGCGCCACCATTGCGCTGGC
GCGGTTGATCCGCGAGAAACAGCCGAAGTTGTATGACTGGCTGTTTCAATTGCGCAGCAAACAGAAGGTCATGGATCAGA
TTCGCCTGCTGCAACCGCTGGTGCATATCTCCGGACGCTTCTCGGCGGCGCGGCACTATGTCGGTGTGGTGCTGCCATTG
GCCTGGCATCCGCGTAATCGCAATGCGCTGATCGTCTGTGACCTGCACCTTGATCCGCAAGGCTTGCTGGACCTGGACGC
CGAAACCCTGCGCCGGCGCCTGTACACCCGCCGCGACGACCTCGCCGAGGGTGAACTGCCGGTGCCGCTGAAACTGATTC
ACATCAATCGCTGCCCGGTGGTGGCGCCGTTGTCGGTGTTGCGTGCCGACGATCAGCAGCGTCTGGGCCTGGACATGGCG
CTGTATCAGGCACGTGCACTGCGGCTAAGTGACGCACAACAAGTTTGGAAAGATAAAGTCGCGGCGATTTACGCCAGCGA
AGACTTCACGCCCAGCGAAGATCCGGAACAGCAGTTGTACGATGGATTTATCGGTGATCGCGATCGGCGTCTATGCGAGC
AAGTGAGAACGGCGGATCCGGCGCAATTAGCGCAAGAGCACTGGCCGTTCGATGATGAACGTCTGCCGGAATTACTCTTT
CGATATCGCGCACGCAACTTTCCCGACACGTTGAATTTCGAGGAGCAAGAACGCTGGAGAATATTCTGTCAGCAGCGTTT
GTCCGAGCCGCAAATGGGCGCGCCTAATACCCTGCAATCTTTTGCCGAGGCCGCGCAGCAATGGGCGCTTAGTGCTACGC
CGATACAGAATCAAGTGCTCAATGAGTGGCAGAATTATGTCCAGGCATTGCGCAAACGTTTGAATCTTTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(205-468)

Exonuclease (RNase_T)

(6-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

46.072

98.95

0.456

Multiple sequence alignment