Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   E4T63_RS18755 Genome accession   NZ_CP038438
Coordinates   4088098..4088706 (+) Length   202 a.a.
NCBI ID   WP_003226590.1    Uniprot ID   A0ABS0BU14
Organism   Pseudomonas fluorescens strain LBUM677     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4083098..4093706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS18740 (E4T63_18740) - 4085243..4085980 (-) 738 WP_123588508.1 S-methyl-5'-thioinosine phosphorylase -
  E4T63_RS18745 (E4T63_18745) nagZ 4085992..4087002 (-) 1011 WP_135296248.1 beta-N-acetylhexosaminidase -
  E4T63_RS18750 (E4T63_18750) - 4087161..4087868 (-) 708 WP_007961819.1 TetR/AcrR family transcriptional regulator -
  E4T63_RS18755 (E4T63_18755) dinR/lexA 4088098..4088706 (+) 609 WP_003226590.1 transcriptional repressor LexA Regulator
  E4T63_RS18760 (E4T63_18760) sulA 4088717..4089190 (+) 474 WP_003226591.1 SOS-induced cell division inhibitor SulA -
  E4T63_RS18765 (E4T63_18765) - 4089285..4089518 (-) 234 WP_003226592.1 hypothetical protein -
  E4T63_RS18770 (E4T63_18770) - 4089625..4090149 (-) 525 WP_097088548.1 DUF6586 family protein -
  E4T63_RS18775 (E4T63_18775) topA 4090294..4092924 (-) 2631 WP_095140031.1 type I DNA topoisomerase -
  E4T63_RS18780 (E4T63_18780) - 4093039..4093275 (-) 237 WP_134786957.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22241.66 Da        Isoelectric Point: 6.9736

>NTDB_id=314895 E4T63_RS18755 WP_003226590.1 4088098..4088706(+) (dinR/lexA) [Pseudomonas fluorescens strain LBUM677]
MLKLTPRQAEILAFIKRCLEDNGYPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEAKADDSTL
PIIGRVAAGAPILAQQHIEESCNINPAFFHPRADYLLRVHGMSMKDIGIFDGDLLAVHTTREARNGQVVVARIGDEVTVK
RFKREGSKVWLIAENPEFAPIEVDLKDQELVIEGLSVGVIRR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=314895 E4T63_RS18755 WP_003226590.1 4088098..4088706(+) (dinR/lexA) [Pseudomonas fluorescens strain LBUM677]
ATGCTAAAGCTGACGCCACGCCAAGCCGAGATTCTGGCCTTTATCAAACGCTGCCTCGAAGACAACGGCTACCCGCCAAC
CCGCGCGGAAATCGCTCAGGAGCTCGGTTTCAAGTCGCCCAACGCGGCGGAAGAACACCTCAAGGCCCTCGCCCGCAAAG
GTGCAATCGAAATGACCCCGGGCGCCTCCCGCGGTATTCGTATCCCCGGCTTCGAAGCCAAGGCTGACGACTCTACCCTG
CCGATCATTGGCCGGGTGGCTGCCGGCGCACCGATCCTCGCCCAGCAGCACATCGAAGAGTCCTGCAATATCAACCCTGC
GTTCTTCCACCCTCGTGCTGATTACCTGCTGCGCGTACACGGCATGAGCATGAAGGACATCGGTATTTTCGACGGTGACC
TGCTGGCGGTTCACACCACCCGCGAAGCACGCAATGGTCAGGTCGTGGTTGCGCGAATCGGCGACGAAGTCACCGTCAAA
CGCTTCAAGCGCGAAGGCAGCAAAGTCTGGTTGATTGCCGAAAACCCTGAGTTCGCCCCTATCGAAGTCGACCTGAAAGA
TCAGGAACTGGTGATCGAAGGCTTGAGTGTCGGCGTAATCCGCCGCTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(81-194)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.391

Multiple sequence alignment