Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D3Z87_RS07815 Genome accession   NZ_CP032310
Coordinates   1475939..1476403 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain WB800N     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1470939..1481403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z87_RS07795 (D3Z87_07770) kinA 1471405..1473225 (+) 1821 WP_003245779.1 sporulation histidine kinase KinA -
  D3Z87_RS07800 (D3Z87_07775) dapX 1473236..1474417 (-) 1182 WP_003232415.1 aminotransferase A -
  D3Z87_RS07805 (D3Z87_07780) - 1474619..1474780 (-) 162 WP_003245246.1 hypothetical protein -
  D3Z87_RS07810 (D3Z87_07785) cheV 1474984..1475895 (+) 912 WP_009967126.1 chemotaxis protein CheV -
  D3Z87_RS07815 (D3Z87_07790) kre 1475939..1476403 (-) 465 WP_003232406.1 YkyB family protein Regulator
  D3Z87_RS07820 (D3Z87_07795) ykuC 1476529..1477821 (-) 1293 WP_003245267.1 MFS transporter -
  D3Z87_RS07825 (D3Z87_07800) ltdD 1477897..1478391 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  D3Z87_RS07830 (D3Z87_07805) ppeE 1478448..1479308 (-) 861 WP_003232400.1 metallophosphoesterase -
  D3Z87_RS07835 (D3Z87_07810) fadH 1479451..1480215 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=314886 D3Z87_RS07815 WP_003232406.1 1475939..1476403(-) (kre) [Bacillus subtilis strain WB800N]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=314886 D3Z87_RS07815 WP_003232406.1 1475939..1476403(-) (kre) [Bacillus subtilis strain WB800N]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment