Detailed information NTG0314867

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4T63_RS05860
• Genome accession: NZ_CP038438
• Coordinates: 1310091..1311101 (+)
• Length: 336 a.a.
• NCBI ID: WP_007964304.1
• Uniprot ID: A0A2A2PID4
• Organism: Pseudomonas fluorescens strain LBUM677
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1305091..1316101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4T63_RS05835 (E4T63_05835)	ispF	1305949..1306422 (+)	474	WP_135295060.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4T63_RS05840 (E4T63_05840)	truD	1306419..1307477 (+)	1059	WP_135295061.1	tRNA pseudouridine(13) synthase TruD	-
E4T63_RS05845 (E4T63_05845)	surE	1307465..1308214 (+)	750	WP_047601272.1	5'/3'-nucleotidase SurE	-
E4T63_RS05850 (E4T63_05850)	-	1308256..1308891 (+)	636	WP_169841266.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
E4T63_RS05855 (E4T63_05855)	-	1309104..1309985 (+)	882	WP_098967475.1	peptidoglycan DD-metalloendopeptidase family protein	-
E4T63_RS05860 (E4T63_05860)	rpoS	1310091..1311101 (+)	1011	WP_007964304.1	RNA polymerase sigma factor RpoS	Regulator
E4T63_RS05865 (E4T63_05865)	fdxA	1311703..1312026 (-)	324	WP_003222178.1	ferredoxin FdxA	-
E4T63_RS05870 (E4T63_05870)	mutS	1312190..1314772 (-)	2583	WP_027611048.1	DNA mismatch repair protein MutS	-
E4T63_RS05875 (E4T63_05875)	-	1314982..1315716 (+)	735	WP_027611049.1	XRE family transcriptional regulator	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 38252.29 Da
• Isoelectric Point: 4.8278

>NTDB_id=314867 E4T63_RS05860 WP_007964304.1 1310091..1311101(+) (rpoS) [Pseudomonas fluorescens strain LBUM677]
MALSKEVPEFDIDDEVLLMEAGIDSESSMSNDEGAAPPSVRSKSRQSASLKQHKYIDYTRALDATQLYLNEIGFSPLLSP
EEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQT
IERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKT
LLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVVRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRL
REILEKNGLSSESLFQ

Nucleotide

• Length: 1011 bp

>NTDB_id=314867 E4T63_RS05860 WP_007964304.1 1310091..1311101(+) (rpoS) [Pseudomonas fluorescens strain LBUM677]
ATGGCTCTCAGTAAAGAAGTGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGGCCGGCATCGATTCGGAATC
TTCGATGTCGAATGATGAAGGGGCTGCTCCACCTTCCGTTCGTTCCAAATCCAGACAATCCGCTTCACTTAAACAACACA
AGTACATCGACTACACTCGGGCACTCGATGCCACGCAGCTGTATCTCAACGAAATCGGCTTTTCACCACTGCTCTCCCCG
GAGGAAGAAGTTCATTTTGCGCGTCTGTCGCAAAGTGGCGACCCTGCCGGGCGCAAGCGCATGATTGAAAGTAACCTGCG
GCTGGTCGTGAAGATCGCCCGGCGTTACGTCAATCGGGGGCTGTCGCTGCTGGATCTGATCGAAGAGGGTAATCTCGGCC
TGATCCGCGCAGTGGAAAAGTTCGATCCCGAGCGTGGCTTCCGCTTCTCGACCTACGCGACCTGGTGGATCCGTCAGACC
ATCGAGCGCGCGATCATGAATCAGACCCGGACCATCCGGTTGCCGATCCATGTGGTCAAGGAGCTCAACGTGTACCTGCG
GGCGGCACGGGAGCTGACGCAAAAACTCGATCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAAAAACCGGTGG
GCGAGGTCAAGCGCATGCTCGGCCTGAACGAGCGGGTTTCTTCGGTCGACGTCTCGCTGGGTCCGGATTCGGATAAAACC
CTGCTGGACACCCTGACGGATGACCGTCCGACCGATCCATGTGAACTGCTGCAGGATGACGACCTGTCGCAGAGCATCGA
TCAATGGCTCTCGGAACTGACCGACAAGCAGCGCGAGGTGGTCGTACGCCGCTTCGGCCTGCGCGGCCATGAGAGCAGCA
CGCTGGAAGACGTAGGCCTGGAGATCGGCCTGACCCGTGAACGGGTGCGGCAGATCCAGGTGGAAGGCCTCAAGCGCCTT
CGCGAAATCCTCGAGAAGAATGGCCTGTCGAGCGAGTCGCTGTTTCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (101-170)

• Sigma-70, region 4 (Sigma70_r4) (269-322)

• Sigma-70 region 3 (Sigma70_r3) (181-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (63-95)

3D structure

• AlphaFold DB: A0A2A2PID4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	65.868	99.405	0.655