Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CDG62_RS04965 Genome accession   NZ_CP032286
Coordinates   454768..455625 (+) Length   285 a.a.
NCBI ID   WP_087527408.1    Uniprot ID   A0A385N603
Organism   Acinetobacter sp. WCHA55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449768..460625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS04940 (CDG62_04945) - 450381..450755 (-) 375 WP_087527405.1 hypothetical protein -
  CDG62_RS04945 (CDG62_04950) - 450968..452020 (-) 1053 WP_228254420.1 sensor domain-containing diguanylate cyclase -
  CDG62_RS04950 (CDG62_04955) - 452298..452873 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  CDG62_RS04955 (CDG62_04960) - 452965..453675 (-) 711 WP_087527406.1 DUF3108 domain-containing protein -
  CDG62_RS04960 (CDG62_04965) - 453830..454507 (-) 678 WP_087527407.1 hypothetical protein -
  CDG62_RS04965 (CDG62_04970) tonB2 454768..455625 (+) 858 WP_087527408.1 energy transducer TonB Machinery gene
  CDG62_RS04970 (CDG62_04975) - 455914..458106 (+) 2193 WP_087527409.1 TonB-dependent siderophore receptor -
  CDG62_RS04975 (CDG62_04980) - 458357..458767 (-) 411 WP_087527424.1 hypothetical protein -
  CDG62_RS04980 (CDG62_04985) ybeY 458869..459348 (-) 480 WP_087527410.1 rRNA maturation RNase YbeY -
  CDG62_RS04985 (CDG62_04990) - 459406..460482 (-) 1077 WP_087527411.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32629.11 Da        Isoelectric Point: 6.3665

>NTDB_id=314737 CDG62_RS04965 WP_087527408.1 454768..455625(+) (tonB2) [Acinetobacter sp. WCHA55]
MPLAHNWWKDPIFTATVVLAVFLHLVILTLQFTMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEEQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=314737 CDG62_RS04965 WP_087527408.1 454768..455625(+) (tonB2) [Acinetobacter sp. WCHA55]
ATGCCTTTGGCTCATAATTGGTGGAAAGACCCAATTTTTACAGCGACCGTAGTACTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTCTGCAATTTACTATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCTGTTACTTTGCGCCCTTCTGATC
AAAAAATTGAAAACGCAGATTTTTTGGCACAAGCCGATCAACAGGGTTCAGGGACTTTTCGTGAGTCACATCGCATGTCG
AGTGATATGCCTGCACCGATGCTTGAGCAAAGCACAGGCGAAGAGCAGCGTGAGACTTTAGAACAGATCCAACAAAAACG
TGAACTGAATTTTGAAGAAAAGCTGTTGATGACGACTTTAAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CTATGGAAGAAATGAATAGTCAGTTTCAAGCTAAAGCTGCAATGGTGGCCAGTCTTGAAGCACAATATTTACAACGCCAA
CAAAACTTTAGTCGTCAGCAAAAAATCAAAACTGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCAGCTTATCTTGA
AAAGTTCCGTCAGAAAGTAGAATTTTATGGCAATCGTTACTATCCGGAAGCAGCTAAACAGCAGCGACTGGCAGGTGAAG
TACGATTAATGGTGATTCTAAATGCGTCAGGAGGCATTCGCGCTATACGCCTGATTGATAGTTCAGGTCATGAAATGCTC
GATGAAGCTGCAAAAGCCTCGGTACGTAAGGCAGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGCT
ACGTATTGTGCGCACATGGCGTTTTGACCCAGCAGAGGCAGAATTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385N603

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.404

98.947

0.726

Multiple sequence alignment