Detailed information NTG0031466

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECSP_RS19160
• Genome accession: NC_013008
• Coordinates: 3646252..3647244 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081559.1
• Uniprot ID: -
• Organism: Escherichia coli O157:H7 str. TW14359
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3641252..3652244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECSP_RS19135 (ECSP_3684)	pphB	3642614..3643270 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
ECSP_RS19140 (ECSP_3685)	-	3643311..3643547 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ECSP_RS19145 (ECSP_3686)	-	3643558..3644985 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ECSP_RS19150 (ECSP_3687)	-	3644985..3645578 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ECSP_RS19155 (ECSP_3688)	-	3645725..3646132 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
ECSP_RS19160 (ECSP_3689)	rpoS	3646252..3647244 (-)	993	WP_000081559.1	RNA polymerase sigma factor RpoS	Regulator
ECSP_RS19165 (ECSP_3690)	nlpD	3647307..3648353 (-)	1047	WP_306344721.1	murein hydrolase activator NlpD	-
ECSP_RS19170 (ECSP_3691)	pcm	3648538..3649164 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECSP_RS19175 (ECSP_3692)	surE	3649158..3649919 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECSP_RS19180 (ECSP_3693)	truD	3649900..3650949 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
ECSP_RS19185 (ECSP_3694)	ispF	3650946..3651425 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECSP_RS19190 (ECSP_3695)	ispD	3651425..3652135 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.80 Da
• Isoelectric Point: 4.5597

>NTDB_id=31466 ECSP_RS19160 WP_000081559.1 3646252..3647244(-) (rpoS) [Escherichia coli O157:H7 str. TW14359]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWPFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=31466 ECSP_RS19160 WP_000081559.1 3646252..3647244(-) (rpoS) [Escherichia coli O157:H7 str. TW14359]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCCGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (265-315)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712