Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECSP_RS13885 Genome accession   NC_013008
Coordinates   2655389..2655865 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli O157:H7 str. TW14359     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2650389..2660865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSP_RS13855 (ECSP_2667) - 2650554..2651459 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  ECSP_RS13860 (ECSP_2668) - 2651456..2652526 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  ECSP_RS13865 (ECSP_2669) - 2652662..2653345 (+) 684 WP_000775497.1 hypothetical protein -
  ECSP_RS13870 (ECSP_2670) - 2653361..2653771 (+) 411 WP_000846711.1 hypothetical protein -
  ECSP_RS13875 (ECSP_2671) - 2653992..2654813 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  ECSP_RS13880 (ECSP_2672) - 2654895..2655374 (+) 480 WP_000860080.1 antirestriction protein -
  ECSP_RS13885 (ECSP_2673) radC 2655389..2655865 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  ECSP_RS13890 (ECSP_2674) yeeT 2655928..2656149 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECSP_RS13895 (ECSP_2675) cbeA 2656223..2656591 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECSP_RS13900 (ECSP_2676) cbtA 2656680..2657053 (+) 374 Protein_2673 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECSP_RS13905 (ECSP_2677) yeeW 2657050..2657244 (+) 195 WP_000988600.1 DUF5983 family protein -
  ECSP_RS33235 (ECSP_2678) - 2657290..2657370 (+) 81 Protein_2675 hypothetical protein -
  ECSP_RS34105 - 2657659..2657766 (-) 108 WP_074147515.1 transposase domain-containing protein -
  ECSP_RS34535 (ECSP_2679) - 2657718..2658041 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  ECSP_RS13925 (ECSP_2680) tmaR 2658142..2658471 (-) 330 WP_000450409.1 DUF496 family protein -
  ECSP_RS13930 (ECSP_2681) yeeA 2658643..2659701 (-) 1059 WP_001202488.1 FUSC family protein -
  ECSP_RS13935 (ECSP_2682) sbmC 2659900..2660373 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=31453 ECSP_RS13885 WP_001186192.1 2655389..2655865(+) (radC) [Escherichia coli O157:H7 str. TW14359]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=31453 ECSP_RS13885 WP_001186192.1 2655389..2655865(+) (radC) [Escherichia coli O157:H7 str. TW14359]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment