Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM363_RS11925 Genome accession   NZ_CP032184
Coordinates   1627692..1628306 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain AR_0116     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622692..1633306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM363_RS11905 (AM363_11935) - 1623074..1624834 (-) 1761 WP_003035878.1 AAA family ATPase -
  AM363_RS11910 (AM363_11940) matP 1625020..1625472 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AM363_RS11915 (AM363_11945) ompA 1625562..1626608 (-) 1047 WP_003035883.1 porin OmpA -
  AM363_RS11920 (AM363_11950) sulA 1626966..1627475 (-) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  AM363_RS11925 (AM363_11955) sxy/tfoX 1627692..1628306 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AM363_RS11930 (AM363_11960) yccS 1628284..1630437 (-) 2154 WP_032939270.1 YccS family putative transporter -
  AM363_RS11935 (AM363_11965) - 1630456..1630902 (-) 447 WP_003035892.1 YccF domain-containing protein -
  AM363_RS11940 (AM363_11970) helD 1631028..1633082 (+) 2055 WP_102191186.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=314365 AM363_RS11925 WP_003035889.1 1627692..1628306(+) (sxy/tfoX) [Citrobacter freundii strain AR_0116]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=314365 AM363_RS11925 WP_003035889.1 1627692..1628306(+) (sxy/tfoX) [Citrobacter freundii strain AR_0116]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment