Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM455_RS14975 Genome accession   NZ_CP032167
Coordinates   2889695..2890291 (-) Length   198 a.a.
NCBI ID   WP_069196484.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain AR_0076     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2884695..2895291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM455_RS14960 (AM455_14975) helD 2884903..2886957 (-) 2055 WP_065808347.1 DNA helicase IV -
  AM455_RS14965 (AM455_14980) - 2887082..2887528 (+) 447 WP_002898425.1 YccF domain-containing protein -
  AM455_RS14970 (AM455_14985) yccS 2887546..2889681 (+) 2136 WP_023316617.1 YccS family putative transporter -
  AM455_RS14975 (AM455_14990) sxy/tfoX 2889695..2890291 (-) 597 WP_069196484.1 TfoX/Sxy family DNA transformation protein Regulator
  AM455_RS14985 (AM455_15000) sulA 2890640..2891149 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AM455_RS14990 (AM455_15005) ompA 2891502..2892572 (+) 1071 WP_002898408.1 porin OmpA -
  AM455_RS14995 (AM455_15010) matP 2892704..2893156 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM455_RS15000 (AM455_15015) - 2893342..2895099 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.16 Da        Isoelectric Point: 10.1974

>NTDB_id=314304 AM455_RS14975 WP_069196484.1 2889695..2890291(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0076]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQKLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=314304 AM455_RS14975 WP_069196484.1 2889695..2890291(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0076]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGAAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

99.495

0.515

Multiple sequence alignment