Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | D3P10_RS06325 | Genome accession | NZ_CP032159 |
| Coordinates | 1264452..1265426 (+) | Length | 324 a.a. |
| NCBI ID | WP_119176369.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain 22.1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1259452..1270426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3P10_RS06290 (D3P10_06290) | rpmG | 1259893..1260042 (+) | 150 | WP_002451882.1 | 50S ribosomal protein L33 | - |
| D3P10_RS06295 (D3P10_06295) | - | 1260274..1260828 (+) | 555 | WP_058710070.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| D3P10_RS06300 (D3P10_06300) | - | 1260825..1262279 (+) | 1455 | WP_107529357.1 | rhomboid family protein | - |
| D3P10_RS06305 (D3P10_06305) | - | 1262269..1262472 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| D3P10_RS06310 (D3P10_06310) | - | 1262469..1263455 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| D3P10_RS06315 (D3P10_06315) | - | 1263455..1263778 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| D3P10_RS06320 (D3P10_06320) | - | 1263782..1264405 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| D3P10_RS06325 (D3P10_06325) | comGA | 1264452..1265426 (+) | 975 | WP_119176369.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| D3P10_RS06330 (D3P10_06330) | comGB | 1265398..1266465 (+) | 1068 | WP_107529356.1 | competence type IV pilus assembly protein ComGB | - |
| D3P10_RS06335 (D3P10_06335) | comGC | 1266478..1266795 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| D3P10_RS12660 (D3P10_06340) | comGD | 1266773..1267213 (+) | 441 | WP_071561239.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| D3P10_RS12550 | - | 1267290..1267493 (+) | 204 | WP_015364971.1 | hypothetical protein | - |
| D3P10_RS06345 (D3P10_06345) | - | 1267534..1267908 (+) | 375 | WP_240431426.1 | competence type IV pilus minor pilin ComGF | - |
| D3P10_RS06355 (D3P10_06355) | - | 1268067..1268585 (+) | 519 | WP_071561236.1 | shikimate kinase | - |
| D3P10_RS06360 (D3P10_06360) | gcvT | 1268757..1269842 (+) | 1086 | WP_119176371.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37145.32 Da Isoelectric Point: 9.2695
>NTDB_id=314249 D3P10_RS06325 WP_119176369.1 1264452..1265426(+) (comGA) [Staphylococcus warneri strain 22.1]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLINKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLINKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=314249 D3P10_RS06325 WP_119176369.1 1264452..1265426(+) (comGA) [Staphylococcus warneri strain 22.1]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATCAACAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCGTTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGTCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATCAACAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCGTTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGTCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGATTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
74.074 |
100 |
0.741 |
| comGA | Staphylococcus aureus N315 |
74.074 |
100 |
0.741 |