Detailed information NTG0314237

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E3172_RS05520
• Genome accession: NZ_CP038412
• Coordinates: 1139491..1140468 (+)
• Length: 325 a.a.
• NCBI ID: WP_020234034.1
• Uniprot ID: -
• Organism: Escherichia coli O157:H7 strain 493/89
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1134491..1145468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E3172_RS05490 (E3172_05635)	ispD	1134537..1135247 (+)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E3172_RS05495 (E3172_05640)	ispF	1135247..1135726 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E3172_RS05500 (E3172_05645)	truD	1135723..1136772 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
E3172_RS05505 (E3172_05650)	surE	1136753..1137514 (+)	762	WP_001358984.1	5'/3'-nucleotidase SurE	-
E3172_RS05510 (E3172_05655)	pcm	1137508..1138134 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E3172_RS05515 (E3172_05660)	nlpD	1138319..1139413 (+)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
E3172_RS05520 (E3172_05665)	rpoS	1139491..1140468 (+)	978	WP_020234034.1	RNA polymerase sigma factor RpoS	Regulator
E3172_RS05525 (E3172_05670)	-	1140588..1140995 (-)	408	WP_000175365.1	MarR family transcriptional regulator	-
E3172_RS05530 (E3172_05675)	-	1141142..1141735 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
E3172_RS05535 (E3172_05680)	-	1141735..1143162 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
E3172_RS05540 (E3172_05685)	-	1143173..1143409 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
E3172_RS05545 (E3172_05690)	pphB	1143450..1144106 (-)	657	WP_001141350.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37429.27 Da
• Isoelectric Point: 4.5597

>NTDB_id=314237 E3172_RS05520 WP_020234034.1 1139491..1140468(+) (rpoS) [Escherichia coli O157:H7 strain 493/89]
MKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALR
GDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTI
RLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENG
PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIE
ALFRE

Nucleotide

• Length: 978 bp

>NTDB_id=314237 E3172_RS05520 WP_020234034.1 1139491..1140468(+) (rpoS) [Escherichia coli O157:H7 strain 493/89]
CTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGAAAAGGCCTTAGTAGA
AGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTGTGTTGGACGCGACTC
AGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCGCGTCGCGCACTGCGT
GGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCGCCGTTATGGCAATCG
TGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGTTTGACCCGGAACGTG
GTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAACCAAACCCGTACTATT
CGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCATAAGCTGGACCATGA
ACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTCGTCTTAACGAGCGCA
TTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGATGAAAAAGAGAACGGT
CCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAACGCCAAACAGCGTGA
AGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTGAAATTGGCCTCACCC
GTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAGGGGCTGAATATCGAA
GCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-83)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-243)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	99.385	0.726