Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HELPY_RS05640 Genome accession   NC_012973
Coordinates   1166837..1167886 (+) Length   349 a.a.
NCBI ID   WP_000115800.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161837..1172886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS05620 (HELPY_1159) - 1161866..1162609 (+) 744 WP_001916162.1 carbonic anhydrase -
  HELPY_RS05625 (HELPY_1160) - 1162839..1164008 (-) 1170 WP_000446665.1 DUF874 family protein -
  HELPY_RS05630 (HELPY_1161) asd 1164420..1165460 (-) 1041 WP_000860908.1 aspartate-semialdehyde dehydrogenase -
  HELPY_RS05635 (HELPY_1162) hisS 1165447..1166775 (-) 1329 WP_000632438.1 histidine--tRNA ligase -
  HELPY_RS05640 (HELPY_1163) waaF 1166837..1167886 (+) 1050 WP_000115800.1 lipopolysaccharide heptosyltransferase II Regulator
  HELPY_RS05645 (HELPY_1164) - 1168069..1168344 (-) 276 WP_000744192.1 hypothetical protein -
  HELPY_RS05650 (HELPY_1166) - 1168563..1169552 (+) 990 WP_001187422.1 aldo/keto reductase -
  HELPY_RS05655 (HELPY_1167) fusA 1170114..1172192 (-) 2079 WP_000101823.1 elongation factor G -
  HELPY_RS05660 (HELPY_1168) rpsG 1172204..1172671 (-) 468 WP_001254357.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39602.37 Da        Isoelectric Point: 9.3448

>NTDB_id=31420 HELPY_RS05640 WP_000115800.1 1166837..1167886(+) (waaF) [Helicobacter pylori B38]
MSVNVPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLSTYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFH
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHAAASMQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=31420 HELPY_RS05640 WP_000115800.1 1166837..1167886(+) (waaF) [Helicobacter pylori B38]
ATGAGCGTAAATGTGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTATCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACCAGCATTGAAGAATTGATAGAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCGGCTGCTAGCATGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCGCCTTGCAAAAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.427

97.994

0.367

Multiple sequence alignment