Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   D3A95_RS05370 Genome accession   NZ_CP032152
Coordinates   1110480..1110857 (-) Length   125 a.a.
NCBI ID   WP_181496618.1    Uniprot ID   A0A7D6INF8
Organism   Thermosynechococcus sichuanensis E542     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105480..1115857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3A95_RS05355 (D3A95_05420) - 1105816..1108422 (-) 2607 WP_181496615.1 hybrid sensor histidine kinase/response regulator -
  D3A95_RS05360 (D3A95_05425) - 1108436..1109965 (-) 1530 WP_233838642.1 methyl-accepting chemotaxis protein -
  D3A95_RS05365 (D3A95_05430) - 1109992..1110474 (-) 483 WP_220131083.1 chemotaxis protein CheW -
  D3A95_RS05370 (D3A95_05435) pilH 1110480..1110857 (-) 378 WP_181496618.1 response regulator transcription factor Machinery gene
  D3A95_RS05375 (D3A95_05440) - 1110857..1111999 (-) 1143 WP_181496619.1 response regulator -
  D3A95_RS05380 (D3A95_05450) - 1112663..1114000 (+) 1338 WP_181496620.1 MotA/TolQ/ExbB proton channel family protein -
  D3A95_RS05385 (D3A95_05455) urtE 1114004..1114702 (-) 699 WP_181496877.1 urea ABC transporter ATP-binding subunit UrtE -
  D3A95_RS05390 (D3A95_05460) urtD 1114753..1115520 (-) 768 WP_181496621.1 urea ABC transporter ATP-binding protein UrtD -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14113.27 Da        Isoelectric Point: 4.4886

>NTDB_id=314115 D3A95_RS05370 WP_181496618.1 1110480..1110857(-) (pilH) [Thermosynechococcus sichuanensis E542]
MKQVLVVEDSRTEQTMIVSILEKLGHQAHVAETAEKAMEWLAAHQPPDLIVLDIVMPGANGLELCREVRANPLLKTVPII
FCSSKDQDFDRFWALRQGGNAYITKPFEPEDLIETINEYLPPLSQ

Nucleotide


Download         Length: 378 bp        

>NTDB_id=314115 D3A95_RS05370 WP_181496618.1 1110480..1110857(-) (pilH) [Thermosynechococcus sichuanensis E542]
ATGAAGCAGGTGCTAGTCGTTGAGGATTCCCGCACAGAGCAAACCATGATTGTCTCAATTTTAGAGAAATTGGGACACCA
AGCCCATGTGGCGGAAACAGCGGAAAAGGCCATGGAATGGTTGGCCGCACATCAGCCTCCCGATTTAATTGTGCTTGATA
TTGTCATGCCGGGCGCCAATGGCTTGGAACTGTGCCGCGAAGTACGGGCAAATCCCCTTCTCAAGACAGTGCCGATTATC
TTTTGCTCCTCTAAGGATCAGGACTTTGATCGCTTTTGGGCCTTGCGGCAGGGGGGCAATGCCTACATTACAAAGCCCTT
TGAACCAGAAGATTTAATTGAAACCATTAACGAGTACTTACCTCCCTTATCTCAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D6INF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

96

0.48

Multiple sequence alignment