Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HELPY_RS02760 Genome accession   NC_012973
Coordinates   550077..551597 (+) Length   506 a.a.
NCBI ID   WP_000611105.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 545077..556597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS02730 (HELPY_0562) moaC 545225..545701 (+) 477 WP_001131519.1 cyclic pyranopterin monophosphate synthase MoaC -
  HELPY_RS02735 (HELPY_0563) hpaA 545820..546602 (+) 783 WP_000646641.1 flagellar sheath lipoprotein HpaA -
  HELPY_RS02740 (HELPY_0564) - 546631..547467 (+) 837 WP_001037687.1 outer membrane protein -
  HELPY_RS02745 (HELPY_0565) tig 547579..548934 (+) 1356 WP_001047771.1 trigger factor -
  HELPY_RS02750 (HELPY_0566) clpP 548955..549542 (+) 588 WP_000540572.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HELPY_RS02755 (HELPY_0567) def 549547..550071 (+) 525 WP_001185873.1 peptide deformylase -
  HELPY_RS02760 (HELPY_0568) comM 550077..551597 (+) 1521 WP_000611105.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HELPY_RS02765 (HELPY_0569) - 551622..553682 (+) 2061 WP_001158815.1 heavy metal translocating P-type ATPase -
  HELPY_RS08560 - 553730..554215 (+) 486 WP_231844038.1 restriction endonuclease subunit S -
  HELPY_RS02770 (HELPY_0571) - 554109..555338 (-) 1230 WP_000176316.1 RNA-guided endonuclease InsQ/TnpB family protein -
  HELPY_RS02775 (HELPY_0572) - 555325..555957 (-) 633 WP_000836802.1 IS607 family transposase -
  HELPY_RS02780 (HELPY_0573) - 555954..556148 (-) 195 WP_001114660.1 type II toxin-antitoxin system HicA family toxin -
  HELPY_RS02785 (HELPY_0574) - 556141..556359 (-) 219 WP_000906663.1 type II toxin-antitoxin system HicB family antitoxin -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57227.26 Da        Isoelectric Point: 8.3893

>NTDB_id=31411 HELPY_RS02760 WP_000611105.1 550077..551597(+) (comM) [Helicobacter pylori B38]
MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=31411 HELPY_RS02760 WP_000611105.1 550077..551597(+) (comM) [Helicobacter pylori B38]
ATGATTAACACGATATTTTGCACAACCATGCAAAGAGGGGTGGCAGAAATCGTGGCTGTAGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCGCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAATTGGCTTTTAAAGAGTGGTTCGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAA
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCATTAGATTTTAAGGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCACAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGTTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTCTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.221

100

0.982
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment