Detailed information NTG0031411

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: MADE_RS04650
• Genome accession: NC_011138
• Coordinates: 1023416..1024462 (+)
• Length: 348 a.a.
• NCBI ID: WP_012517447.1
• Uniprot ID: B4RVU1
• Organism: Alteromonas mediterranea DE
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1018416..1029462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MADE_RS04640 (MADE_1004725)	mutS	1020004..1022595 (-)	2592	WP_012517445.1	DNA mismatch repair protein MutS	-
MADE_RS04645 (MADE_1004730)	-	1022756..1023295 (+)	540	WP_012517446.1	CinA family protein	-
MADE_RS04650 (MADE_1004735)	recA	1023416..1024462 (+)	1047	WP_012517447.1	recombinase RecA	Machinery gene
MADE_RS04655 (MADE_1004740)	-	1024767..1025588 (+)	822	WP_012517448.1	ATP-binding cassette domain-containing protein	-
MADE_RS04660 (MADE_1004745)	-	1025572..1026768 (+)	1197	WP_012517449.1	ABC transporter permease	-
MADE_RS04665 (MADE_1004750)	-	1026923..1027240 (-)	318	WP_012517450.1	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 37633.23 Da
• Isoelectric Point: 5.0763

>NTDB_id=31411 MADE_RS04650 WP_012517447.1 1023416..1024462(+) (recA) [Alteromonas mediterranea DE]
MDDNKSKALTAAVGQIEKQFGKGAIMRLGDNQAMDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQVIA
EAQKNGKTCAFVDAEHALDPVYAEKLGVNIDELLVSQPDTGEQALEICDMLVRSGAVDVVIVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTANIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFMIRYGEGISKEAELIDLGVKQKLVDKAGAWYSYKGDRIGQGKANVMKYLKEHPETANEIET
KIRQELLLSKTVKAEEALPQGEDDVLPE

Nucleotide

• Length: 1047 bp

>NTDB_id=31411 MADE_RS04650 WP_012517447.1 1023416..1024462(+) (recA) [Alteromonas mediterranea DE]
GTGGACGATAACAAATCAAAAGCTTTAACCGCCGCAGTAGGCCAAATTGAAAAGCAATTTGGTAAAGGCGCTATCATGCG
CTTAGGCGACAACCAAGCCATGGATATTGAAGCAATTTCTACTGGCTCACTAACCATTGATATCGCTCTAGGCATAGGCG
GTTTACCGTGTGGTCGTGTTGTAGAAATTTACGGCCCTGAATCATCAGGTAAAACCACGCTAACTCTTCAAGTTATCGCT
GAAGCGCAGAAAAATGGTAAAACCTGTGCGTTCGTTGACGCTGAACACGCGCTAGACCCTGTATACGCCGAAAAGTTAGG
CGTAAACATTGACGAGCTATTGGTATCCCAGCCTGACACTGGTGAGCAAGCGTTAGAAATTTGCGACATGTTAGTTCGCT
CTGGTGCCGTAGACGTCGTTATTGTTGACTCGGTTGCTGCACTTACACCAAAAGCCGAAATTGAAGGTGACATGGGTGAT
TCTCACGTTGGTCTTCAGGCCCGCTTGATGTCACAGGCGCTGCGTAAGCTTACGGCAAACATTAAGCGTTCAAACACCCT
TTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTAATGTTTGGTAACCCAGAAACGACAACGGGTGGTAACGCGC
TTAAGTTCTACTCTTCTGTTCGTCTAGACATTCGCCGTATTGGTGCAGTTAAAGAAGGCGATGAGGTAGTGGGTAACGAA
ACCCGCGTGAAGGTCGTGAAAAACAAGGTTGCGCCACCGTTCAAACAAGCTGAATTTATGATCCGCTACGGTGAAGGTAT
CAGCAAAGAAGCAGAGCTTATTGACCTAGGTGTTAAGCAGAAGCTTGTTGATAAAGCCGGCGCTTGGTACAGCTATAAGG
GTGACCGTATTGGTCAAGGTAAAGCAAACGTAATGAAGTACCTTAAGGAACACCCAGAGACAGCAAACGAGATCGAAACG
AAGATCCGCCAAGAACTATTGCTTTCTAAAACAGTAAAGGCAGAAGAAGCATTGCCGCAGGGTGAAGACGACGTACTTCC
TGAGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-268)

3D structure

• AlphaFold DB: B4RVU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	76.385	98.563	0.753
recA	Vibrio cholerae strain A1552	75.362	99.138	0.747
recA	Vibrio cholerae O1 biovar El Tor strain E7946	75.362	99.138	0.747
recA	Acinetobacter baumannii D1279779	72.126	100	0.721
recA	Acinetobacter baylyi ADP1	75.229	93.966	0.707
recA	Neisseria gonorrhoeae MS11	74.383	93.103	0.693
recA	Neisseria gonorrhoeae MS11	74.383	93.103	0.693
recA	Neisseria gonorrhoeae strain FA1090	74.383	93.103	0.693
recA	Glaesserella parasuis strain SC1401	73.765	93.103	0.687
recA	Ralstonia pseudosolanacearum GMI1000	72.669	89.368	0.649
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.095	96.839	0.621
recA	Helicobacter pylori strain NCTC11637	65.138	93.966	0.612
recA	Bacillus subtilis subsp. subtilis str. 168	65.528	92.529	0.606
recA	Helicobacter pylori 26695	64.526	93.966	0.606
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.84	95.115	0.598
recA	Streptococcus mitis SK321	59.71	99.138	0.592
recA	Latilactobacillus sakei subsp. sakei 23K	58.453	100	0.586
recA	Streptococcus pneumoniae D39	62.195	94.253	0.586
recA	Streptococcus pneumoniae Rx1	62.195	94.253	0.586
recA	Streptococcus pneumoniae R6	62.195	94.253	0.586
recA	Streptococcus pneumoniae TIGR4	62.195	94.253	0.586
recA	Streptococcus mutans UA159	59.763	97.126	0.58
recA	Streptococcus mitis NCTC 12261	61.28	94.253	0.578
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	62.696	91.667	0.575
recA	Streptococcus pyogenes NZ131	60.923	93.391	0.569
recA	Lactococcus lactis subsp. cremoris KW2	57.585	92.816	0.534