Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   D2M30_RS20805 Genome accession   NZ_CP032146
Coordinates   339919..340083 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 334919..345083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS20800 srfAB 336810..339902 (+) 3093 Protein_312 surfactin non-ribosomal peptide synthetase SrfAB -
  D2M30_RS20805 comS 339919..340083 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=314062 D2M30_RS20805 WP_269387144.1 339919..340083(+) (comS) [Bacillus amyloliquefaciens strain YP6]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=314062 D2M30_RS20805 WP_269387144.1 339919..340083(+) (comS) [Bacillus amyloliquefaciens strain YP6]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGTTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519

Multiple sequence alignment