Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D2M30_RS12830 Genome accession   NZ_CP032146
Coordinates   2544594..2545361 (-) Length   255 a.a.
NCBI ID   WP_071347996.1    Uniprot ID   A0AAP7TAR4
Organism   Bacillus amyloliquefaciens strain YP6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2539594..2550361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS12810 (D2M30_12835) - 2539797..2540609 (-) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -
  D2M30_RS12815 (D2M30_12840) ccpN 2540634..2541272 (-) 639 WP_125122971.1 transcriptional regulator CcpN -
  D2M30_RS12820 (D2M30_12845) glyS 2541373..2543412 (-) 2040 WP_125122972.1 glycine--tRNA ligase subunit beta -
  D2M30_RS12825 (D2M30_12850) glyQ 2543405..2544292 (-) 888 WP_071347997.1 glycine--tRNA ligase subunit alpha -
  D2M30_RS12830 (D2M30_12855) recO 2544594..2545361 (-) 768 WP_071347996.1 DNA repair protein RecO Machinery gene
  D2M30_RS12835 (D2M30_12860) - 2545398..2545541 (-) 144 WP_007408286.1 YqzL family protein -
  D2M30_RS12840 (D2M30_12865) era 2545696..2546601 (-) 906 WP_014470680.1 GTPase Era -
  D2M30_RS12845 (D2M30_12870) - 2546582..2546992 (-) 411 WP_045510514.1 cytidine deaminase -
  D2M30_RS12850 (D2M30_12875) - 2547115..2547489 (-) 375 WP_088613135.1 diacylglycerol kinase family protein -
  D2M30_RS12855 (D2M30_12880) ybeY 2547470..2547943 (-) 474 WP_013352922.1 rRNA maturation RNase YbeY -
  D2M30_RS12860 (D2M30_12885) - 2547944..2550076 (-) 2133 WP_125122973.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29272.93 Da        Isoelectric Point: 8.7962

>NTDB_id=314033 D2M30_RS12830 WP_071347996.1 2544594..2545361(-) (recO) [Bacillus amyloliquefaciens strain YP6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=314033 D2M30_RS12830 WP_071347996.1 2544594..2545361(-) (recO) [Bacillus amyloliquefaciens strain YP6]
ATGCTGACAAAATGTGAAGGAATCGTGCTTCGTACGAATGACTACGGAGAGACGAATAAAATAGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTAACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCAGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGTAAAAGCCAGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906

Multiple sequence alignment