Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D2M30_RS08740 Genome accession   NZ_CP032146
Coordinates   1782040..1782411 (+) Length   123 a.a.
NCBI ID   WP_260434588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1777040..1787411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08735 (D2M30_08750) - 1780476..1781687 (-) 1212 WP_125122633.1 cytochrome P450 -
  D2M30_RS08740 (D2M30_08755) nucA/comI 1782040..1782411 (+) 372 WP_260434588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D2M30_RS08745 (D2M30_08760) - 1782495..1783226 (+) 732 WP_045506046.1 YoaK family protein -
  D2M30_RS08750 (D2M30_08765) - 1783262..1783624 (-) 363 WP_125122635.1 hypothetical protein -
  D2M30_RS08755 (D2M30_08770) - 1783817..1785145 (-) 1329 WP_065521247.1 S8 family peptidase -
  D2M30_RS08760 (D2M30_08775) - 1785329..1785562 (+) 234 WP_014471844.1 hypothetical protein -
  D2M30_RS08765 (D2M30_08780) - 1785817..1786524 (+) 708 WP_013352345.1 poly-gamma-glutamate hydrolase family protein -
  D2M30_RS08770 (D2M30_08785) - 1786584..1787036 (+) 453 WP_125122636.1 OsmC family protein -
  D2M30_RS08775 (D2M30_08790) - 1787050..1787403 (-) 354 WP_014470379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13279.71 Da        Isoelectric Point: 5.1496

>NTDB_id=314021 D2M30_RS08740 WP_260434588.1 1782040..1782411(+) (nucA/comI) [Bacillus amyloliquefaciens strain YP6]
MGAGIHSENTAEAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEDRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=314021 D2M30_RS08740 WP_260434588.1 1782040..1782411(+) (nucA/comI) [Bacillus amyloliquefaciens strain YP6]
ATGGGCGCCGGCATCCATTCGGAGAATACTGCTGAAGCTGCGTCCCGATATGATCAGGTGCTGTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGACATTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGATAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCCGGATTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACGGAAGGCGGGGCAGGGGCTGACATCAGGTATGTAACCCCTTCGGATAATCGCGGAGCCGGTTCATGGGTTGGAAA
TCAAATGAGCGGATATTCCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

55.738

99.187

0.553

Multiple sequence alignment