Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D2M30_RS07210 Genome accession   NZ_CP032146
Coordinates   1373099..1373695 (+) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens strain YP6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1368099..1378695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS07175 (D2M30_07190) - 1368136..1368591 (+) 456 WP_125122524.1 flavodoxin -
  D2M30_RS07180 (D2M30_07195) dapD 1368673..1369383 (+) 711 WP_013352082.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  D2M30_RS07185 (D2M30_07200) - 1369454..1370578 (+) 1125 WP_125122525.1 N-acetyldiaminopimelate deacetylase -
  D2M30_RS07190 (D2M30_07205) - 1370639..1370884 (+) 246 WP_013352084.1 YkuS family protein -
  D2M30_RS07195 (D2M30_07210) - 1370918..1371724 (-) 807 WP_125122526.1 mechanosensitive ion channel family protein -
  D2M30_RS07200 (D2M30_07215) - 1371958..1372161 (+) 204 Protein_1366 peroxiredoxin -
  D2M30_RS07205 (D2M30_07220) - 1372176..1372634 (+) 459 WP_125122528.1 redoxin domain-containing protein -
  D2M30_RS07210 (D2M30_07225) rok 1373099..1373695 (+) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  D2M30_RS07215 (D2M30_07230) - 1373716..1374708 (-) 993 WP_125122529.1 sporulation protein -
  D2M30_RS07220 (D2M30_07235) - 1374855..1375457 (+) 603 WP_125122530.1 molybdenum cofactor guanylyltransferase -
  D2M30_RS07225 (D2M30_07240) - 1375510..1376529 (+) 1020 WP_125122531.1 molybdopterin-synthase adenylyltransferase MoeB -
  D2M30_RS07230 (D2M30_07245) glp 1376547..1377839 (+) 1293 WP_125122532.1 gephyrin-like molybdotransferase Glp -
  D2M30_RS07235 (D2M30_07250) mobB 1377800..1378321 (+) 522 WP_125122533.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=314015 D2M30_RS07210 WP_013352088.1 1373099..1373695(+) (rok) [Bacillus amyloliquefaciens strain YP6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=314015 D2M30_RS07210 WP_013352088.1 1373099..1373695(+) (rok) [Bacillus amyloliquefaciens strain YP6]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTCGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATTACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAGGCGGCAAAACTGCGCGAAGCGGCCATTAAAACGCTGAAACGCCACAATG
CAGCGATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTAAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGGAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833

Multiple sequence alignment