Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D2M30_RS07105 Genome accession   NZ_CP032146
Coordinates   1357055..1357519 (-) Length   154 a.a.
NCBI ID   WP_013352067.1    Uniprot ID   A0AAP7TCI0
Organism   Bacillus amyloliquefaciens strain YP6     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352055..1362519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS07085 (D2M30_07095) - 1352541..1354361 (+) 1821 WP_125122519.1 PAS domain-containing protein -
  D2M30_RS07090 (D2M30_07100) - 1354342..1355555 (-) 1214 Protein_1344 aminotransferase A -
  D2M30_RS20560 (D2M30_1510) - 1355757..1355918 (-) 162 WP_013352065.1 hypothetical protein -
  D2M30_RS07100 (D2M30_07110) cheV 1356107..1357018 (+) 912 WP_013352066.1 chemotaxis protein CheV -
  D2M30_RS07105 (D2M30_07115) kre 1357055..1357519 (-) 465 WP_013352067.1 YkyB family protein Regulator
  D2M30_RS07110 (D2M30_07120) - 1357642..1358934 (-) 1293 WP_125122520.1 MFS transporter -
  D2M30_RS07115 (D2M30_07125) - 1359010..1359504 (-) 495 WP_125123602.1 L,D-transpeptidase family protein -
  D2M30_RS07120 (D2M30_07130) - 1359579..1360442 (-) 864 WP_125122521.1 metallophosphoesterase -
  D2M30_RS07125 (D2M30_07135) fadH 1360586..1361350 (+) 765 WP_125122522.1 2,4-dienoyl-CoA reductase -
  D2M30_RS07130 (D2M30_07140) - 1361465..1362010 (+) 546 WP_125122523.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.57 Da        Isoelectric Point: 10.4864

>NTDB_id=314014 D2M30_RS07105 WP_013352067.1 1357055..1357519(-) (kre) [Bacillus amyloliquefaciens strain YP6]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNLLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=314014 D2M30_RS07105 WP_013352067.1 1357055..1357519(-) (kre) [Bacillus amyloliquefaciens strain YP6]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACTTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCCCTTGCCG
CCAACAGACAGCAGCCCGCTTATCATAAACCCGTGTTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

93.506

100

0.935

Multiple sequence alignment