Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D2M30_RS05220 Genome accession   NZ_CP032146
Coordinates   1015633..1016211 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010633..1021211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS21160 - 1011134..1011649 (-) 516 WP_373418731.1 methyl-accepting chemotaxis protein -
  D2M30_RS21165 - 1011941..1012315 (-) 375 Protein_967 protoglobin domain-containing protein -
  D2M30_RS05205 (D2M30_05220) - 1012550..1014073 (-) 1524 WP_125122341.1 FAD-dependent oxidoreductase -
  D2M30_RS05210 (D2M30_05225) - 1014197..1015054 (+) 858 WP_013351742.1 SDR family oxidoreductase -
  D2M30_RS05215 (D2M30_05230) - 1015084..1015317 (-) 234 WP_013351743.1 IDEAL domain-containing protein -
  D2M30_RS05220 (D2M30_05235) comK 1015633..1016211 (+) 579 WP_013351744.1 competence protein ComK Regulator
  D2M30_RS05225 (D2M30_05240) - 1016357..1016728 (+) 372 WP_125122342.1 iron chaperone -
  D2M30_RS05230 (D2M30_05245) eis 1016760..1017971 (-) 1212 WP_013351746.1 enhanced intracellular survival protein Eis -
  D2M30_RS05235 (D2M30_05250) - 1018126..1018836 (-) 711 WP_125122343.1 YrpD family protein -
  D2M30_RS05240 (D2M30_05255) - 1019032..1019301 (+) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  D2M30_RS05245 (D2M30_05260) - 1019333..1019650 (-) 318 WP_125122344.1 YbjQ family protein -
  D2M30_RS05250 (D2M30_05265) - 1019692..1021161 (-) 1470 WP_115997919.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=314003 D2M30_RS05220 WP_013351744.1 1015633..1016211(+) (comK) [Bacillus amyloliquefaciens strain YP6]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=314003 D2M30_RS05220 WP_013351744.1 1015633..1016211(+) (comK) [Bacillus amyloliquefaciens strain YP6]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCAAGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTCGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTCTACAGAACTGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACAAAAATGATCTACGACTTTATTTTACGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment