Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   D2M30_RS04160 Genome accession   NZ_CP032146
Coordinates   823065..823856 (+) Length   263 a.a.
NCBI ID   WP_125122254.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 818065..828856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS04135 (D2M30_04135) - 820059..820943 (+) 885 WP_125122251.1 PhzF family phenazine biosynthesis isomerase -
  D2M30_RS04140 (D2M30_04140) - 821020..821604 (+) 585 WP_125122252.1 nitroreductase -
  D2M30_RS04145 (D2M30_04145) - 821644..821835 (-) 192 WP_013351432.1 YfhD family protein -
  D2M30_RS04150 (D2M30_04150) - 821906..822016 (-) 111 WP_003223230.1 YfhE family protein -
  D2M30_RS04155 (D2M30_04155) - 822074..822973 (-) 900 WP_125122253.1 TIGR01777 family oxidoreductase -
  D2M30_RS04160 (D2M30_04160) recX 823065..823856 (+) 792 WP_125122254.1 recombination regulator RecX Regulator
  D2M30_RS04165 (D2M30_04165) - 823863..824177 (+) 315 WP_125122255.1 YfhH family protein -
  D2M30_RS04170 (D2M30_04170) - 824320..825513 (+) 1194 WP_065523291.1 MFS transporter -
  D2M30_RS04175 (D2M30_04175) - 825552..825944 (-) 393 WP_125122256.1 DUF2606 family protein -
  D2M30_RS04180 (D2M30_04180) - 825907..826818 (-) 912 WP_125122257.1 serine protease -
  D2M30_RS04185 (D2M30_04185) - 826956..827108 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  D2M30_RS04190 (D2M30_04190) - 827232..827501 (+) 270 WP_013351439.1 YfhJ family protein -
  D2M30_RS04195 (D2M30_04195) - 827633..828160 (+) 528 WP_125122258.1 SH3 domain-containing protein -
  D2M30_RS04200 (D2M30_04200) - 828246..828578 (+) 333 WP_125122259.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31008.29 Da        Isoelectric Point: 6.7768

>NTDB_id=313998 D2M30_RS04160 WP_125122254.1 823065..823856(+) (recX) [Bacillus amyloliquefaciens strain YP6]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTKYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=313998 D2M30_RS04160 WP_125122254.1 823065..823856(+) (recX) [Bacillus amyloliquefaciens strain YP6]
ATGCCGTTTATTACAAAGATATCGACCCAAAAGAAAAATACCGAACGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGATGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGAAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTT
CGGGACCATTTGAAGAAAAAAGAAACACCTGAGATGGTTATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATTAAGGAGACGCTCAGTGCGTTTACGTTTGATGAGCAGATACAGGAA
GCGCTGAAACATATCGGAAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGCTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGAAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791

Multiple sequence alignment