Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D2M30_RS01770 Genome accession   NZ_CP032146
Coordinates   322877..323314 (-) Length   145 a.a.
NCBI ID   WP_013350968.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 317877..328314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS01745 (D2M30_01745) - 318894..320030 (+) 1137 WP_125123582.1 zinc-dependent alcohol dehydrogenase -
  D2M30_RS01750 (D2M30_01750) - 320045..320479 (+) 435 WP_013350964.1 RDD family protein -
  D2M30_RS01755 (D2M30_01755) - 320552..320875 (+) 324 WP_013350965.1 YckD family protein -
  D2M30_RS01760 (D2M30_01760) - 320981..322417 (+) 1437 WP_125122031.1 glycoside hydrolase family 1 protein -
  D2M30_RS01765 (D2M30_01765) nin/comJ 322458..322856 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  D2M30_RS01770 (D2M30_01770) nucA/comI 322877..323314 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D2M30_RS20480 (D2M30_0363) - 323476..323664 (-) 189 WP_045508600.1 hypothetical protein -
  D2M30_RS01780 (D2M30_01780) hxlB 323661..324218 (-) 558 WP_125122032.1 6-phospho-3-hexuloisomerase -
  D2M30_RS01785 (D2M30_01785) hxlA 324215..324850 (-) 636 WP_045508592.1 3-hexulose-6-phosphate synthase -
  D2M30_RS01790 (D2M30_01790) - 325082..325444 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=313993 D2M30_RS01770 WP_013350968.1 322877..323314(-) (nucA/comI) [Bacillus amyloliquefaciens strain YP6]
MKTLKALLLVLIIIAGAVAALIKGDIFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=313993 D2M30_RS01770 WP_013350968.1 322877..323314(-) (nucA/comI) [Bacillus amyloliquefaciens strain YP6]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATATTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAACAATCTCTTAAACATGTGCCTGTAAAAACAGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCAGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment