Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D2M30_RS00250 Genome accession   NZ_CP032146
Coordinates   45715..46005 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40715..51005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS00210 (D2M30_00210) darA 40732..41061 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  D2M30_RS00215 (D2M30_00215) - 41074..41514 (+) 441 WP_013350745.1 YaaR family protein -
  D2M30_RS00220 (D2M30_00220) holB 41526..42515 (+) 990 WP_013350746.1 DNA polymerase III subunit delta' -
  D2M30_RS00225 (D2M30_00225) ricT 42518..43345 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  D2M30_RS00230 (D2M30_00230) yabA 43360..43719 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  D2M30_RS00235 (D2M30_00235) - 43780..44523 (+) 744 WP_125121935.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D2M30_RS00240 (D2M30_00240) - 44510..44809 (+) 300 WP_013350750.1 GIY-YIG nuclease family protein -
  D2M30_RS00245 (D2M30_00245) rsmI 44784..45665 (+) 882 WP_125121936.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D2M30_RS00250 (D2M30_00250) abrB 45715..46005 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  D2M30_RS00255 (D2M30_00255) metG 46488..48479 (+) 1992 WP_125121937.1 methionine--tRNA ligase -
  D2M30_RS00260 (D2M30_00260) - 48555..49322 (+) 768 WP_125121938.1 TatD family hydrolase -
  D2M30_RS00265 (D2M30_00265) - 49457..50776 (+) 1320 WP_125121939.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=313988 D2M30_RS00250 WP_169510469.1 45715..46005(-) (abrB) [Bacillus amyloliquefaciens strain YP6]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=313988 D2M30_RS00250 WP_169510469.1 45715..46005(-) (abrB) [Bacillus amyloliquefaciens strain YP6]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment