Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D3F09_RS04890 Genome accession   NZ_CP032145
Coordinates   1064405..1065034 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 15.TR.026_OXA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059405..1070034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3F09_RS04870 (D3F09_05170) ycbZ 1059795..1061555 (-) 1761 WP_000156479.1 Lon protease family protein -
  D3F09_RS04875 (D3F09_05175) matP 1061741..1062193 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  D3F09_RS04880 (D3F09_05180) ompA 1062268..1063320 (-) 1053 WP_000750418.1 porin OmpA -
  D3F09_RS04885 (D3F09_05190) sulA 1063677..1064186 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  D3F09_RS04890 (D3F09_05195) sxy/tfoX 1064405..1065034 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  D3F09_RS04895 (D3F09_05200) yccS 1064997..1067159 (-) 2163 WP_001550920.1 YccS family putative transporter -
  D3F09_RS04900 (D3F09_05205) yccF 1067169..1067615 (-) 447 WP_001261235.1 YccF domain-containing protein -
  D3F09_RS04905 (D3F09_05210) helD 1067738..1069792 (+) 2055 WP_001550921.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=313966 D3F09_RS04890 WP_000839153.1 1064405..1065034(+) (sxy/tfoX) [Escherichia coli strain 15.TR.026_OXA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=313966 D3F09_RS04890 WP_000839153.1 1064405..1065034(+) (sxy/tfoX) [Escherichia coli strain 15.TR.026_OXA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment