Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D3C60_RS13225 Genome accession   NZ_CP032144
Coordinates   2687393..2688145 (-) Length   250 a.a.
NCBI ID   WP_007408162.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-439D     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2682393..2693145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS13195 (D3C60_13195) - 2682746..2683180 (+) 435 WP_017418279.1 helix-turn-helix transcriptional regulator -
  D3C60_RS13200 (D3C60_13200) - 2683194..2683640 (+) 447 WP_119001899.1 ImmA/IrrE family metallo-endopeptidase -
  D3C60_RS13205 (D3C60_13205) - 2683679..2685103 (+) 1425 WP_069448478.1 recombinase family protein -
  D3C60_RS13210 (D3C60_13210) radC 2685116..2685523 (-) 408 Protein_2542 DNA repair protein RadC -
  D3C60_RS13215 (D3C60_13215) - 2685555..2686124 (-) 570 WP_015417926.1 Maf family protein -
  D3C60_RS13220 (D3C60_13220) - 2686265..2687266 (-) 1002 WP_032866593.1 SPOR domain-containing protein -
  D3C60_RS13225 (D3C60_13225) comC 2687393..2688145 (-) 753 WP_007408162.1 A24 family peptidase Machinery gene
  D3C60_RS13230 (D3C60_13230) - 2688285..2689577 (-) 1293 WP_007408161.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D3C60_RS13235 (D3C60_13235) - 2689636..2692278 (-) 2643 WP_032866591.1 valine--tRNA ligase -
  D3C60_RS13240 (D3C60_13240) - 2692731..2692922 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27187.88 Da        Isoelectric Point: 9.4293

>NTDB_id=313940 D3C60_RS13225 WP_007408162.1 2687393..2688145(-) (comC) [Bacillus velezensis strain BIM B-439D]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=313940 D3C60_RS13225 WP_007408162.1 2687393..2688145(-) (comC) [Bacillus velezensis strain BIM B-439D]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment