Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   D3C60_RS07125 Genome accession   NZ_CP032144
Coordinates   1350304..1350900 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-439D     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345304..1355900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS07095 (D3C60_07095) - 1345516..1345971 (+) 456 WP_007409622.1 flavodoxin -
  D3C60_RS07100 (D3C60_07100) dapD 1346053..1346763 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  D3C60_RS07105 (D3C60_07105) - 1346834..1347958 (+) 1125 WP_032868142.1 N-acetyldiaminopimelate deacetylase -
  D3C60_RS07110 (D3C60_07110) - 1348019..1348264 (+) 246 WP_003154596.1 YkuS family protein -
  D3C60_RS07115 (D3C60_07115) - 1348298..1349104 (-) 807 WP_032868144.1 mechanosensitive ion channel family protein -
  D3C60_RS07120 (D3C60_07120) - 1349393..1349851 (+) 459 WP_007409626.1 TlpA disulfide reductase family protein -
  D3C60_RS07125 (D3C60_07125) rok 1350304..1350900 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  D3C60_RS07130 (D3C60_07130) - 1350921..1351913 (-) 993 WP_007409627.1 hypothetical protein -
  D3C60_RS07135 (D3C60_07135) - 1352059..1352661 (+) 603 WP_032868148.1 molybdenum cofactor guanylyltransferase -
  D3C60_RS07140 (D3C60_07140) - 1352713..1353732 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  D3C60_RS07145 (D3C60_07145) glp 1353750..1355042 (+) 1293 WP_032868150.1 gephyrin-like molybdotransferase Glp -
  D3C60_RS07150 (D3C60_07150) mobB 1355003..1355524 (+) 522 WP_032868152.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=313916 D3C60_RS07125 WP_003154591.1 1350304..1350900(+) (rok) [Bacillus velezensis strain BIM B-439D]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=313916 D3C60_RS07125 WP_003154591.1 1350304..1350900(+) (rok) [Bacillus velezensis strain BIM B-439D]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment