Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   D3C60_RS07025 Genome accession   NZ_CP032144
Coordinates   1334436..1334900 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain BIM B-439D     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329436..1339900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS07005 (D3C60_07005) - 1329916..1331736 (+) 1821 WP_007409606.1 PAS domain-containing protein -
  D3C60_RS07010 (D3C60_07010) - 1331761..1332930 (-) 1170 WP_007611083.1 aminotransferase A -
  D3C60_RS19915 - 1333131..1333292 (-) 162 WP_162889391.1 hypothetical protein -
  D3C60_RS07020 (D3C60_07020) cheV 1333481..1334392 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  D3C60_RS07025 (D3C60_07025) kre 1334436..1334900 (-) 465 WP_003154622.1 YkyB family protein Regulator
  D3C60_RS07030 (D3C60_07030) - 1335023..1336315 (-) 1293 WP_032868138.1 MFS transporter -
  D3C60_RS07035 (D3C60_07035) - 1336391..1336885 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  D3C60_RS07040 (D3C60_07040) - 1336960..1337823 (-) 864 WP_015239758.1 metallophosphoesterase -
  D3C60_RS07045 (D3C60_07045) fadH 1337968..1338732 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  D3C60_RS07050 (D3C60_07050) - 1338846..1339394 (+) 549 WP_007409614.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=313915 D3C60_RS07025 WP_003154622.1 1334436..1334900(-) (kre) [Bacillus velezensis strain BIM B-439D]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=313915 D3C60_RS07025 WP_003154622.1 1334436..1334900(-) (kre) [Bacillus velezensis strain BIM B-439D]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment