Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D3C60_RS05285 Genome accession   NZ_CP032144
Coordinates   1015298..1015876 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BIM B-439D     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010298..1020876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS05265 (D3C60_05265) - 1010801..1012093 (-) 1293 WP_007409192.1 globin-coupled sensor protein -
  D3C60_RS05270 (D3C60_05270) - 1012214..1013737 (-) 1524 WP_032866166.1 FAD-dependent oxidoreductase -
  D3C60_RS05275 (D3C60_05275) - 1013862..1014719 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  D3C60_RS05280 (D3C60_05280) - 1014749..1014982 (-) 234 WP_007409189.1 IDEAL domain-containing protein -
  D3C60_RS05285 (D3C60_05285) comK 1015298..1015876 (+) 579 WP_003155179.1 competence protein ComK Regulator
  D3C60_RS05290 (D3C60_05290) - 1016022..1016390 (+) 369 WP_012117235.1 iron chaperone -
  D3C60_RS05295 (D3C60_05295) - 1016417..1016788 (+) 372 WP_032866165.1 iron chaperone -
  D3C60_RS05300 (D3C60_05300) - 1016836..1018047 (-) 1212 WP_032866164.1 GNAT family N-acetyltransferase -
  D3C60_RS05305 (D3C60_05305) - 1018204..1018914 (-) 711 WP_032866163.1 YrpD family protein -
  D3C60_RS05310 (D3C60_05310) - 1019110..1019379 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  D3C60_RS05315 (D3C60_05315) - 1019412..1019729 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=313904 D3C60_RS05285 WP_003155179.1 1015298..1015876(+) (comK) [Bacillus velezensis strain BIM B-439D]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=313904 D3C60_RS05285 WP_003155179.1 1015298..1015876(+) (comK) [Bacillus velezensis strain BIM B-439D]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment