Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   D3C60_RS04200 Genome accession   NZ_CP032144
Coordinates   821193..821984 (+) Length   263 a.a.
NCBI ID   WP_032867741.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-439D     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 816193..826984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS04175 (D3C60_04175) - 818189..819073 (+) 885 WP_007408548.1 PhzF family phenazine biosynthesis isomerase -
  D3C60_RS04180 (D3C60_04180) - 819150..819734 (+) 585 WP_007408549.1 nitroreductase -
  D3C60_RS04185 (D3C60_04185) - 819774..819965 (-) 192 WP_007408550.1 YfhD family protein -
  D3C60_RS04190 (D3C60_04190) - 820036..820146 (-) 111 WP_003155504.1 YfhE family protein -
  D3C60_RS04195 (D3C60_04195) - 820204..821103 (-) 900 WP_032867743.1 TIGR01777 family oxidoreductase -
  D3C60_RS04200 (D3C60_04200) recX 821193..821984 (+) 792 WP_032867741.1 recombination regulator RecX Regulator
  D3C60_RS04205 (D3C60_04205) - 821991..822305 (+) 315 WP_032867739.1 YfhH family protein -
  D3C60_RS04210 (D3C60_04210) - 822450..823643 (+) 1194 WP_025284446.1 MFS transporter -
  D3C60_RS04215 (D3C60_04215) - 823683..824072 (-) 390 WP_032867737.1 DUF2606 family protein -
  D3C60_RS04220 (D3C60_04220) - 824035..824946 (-) 912 WP_032867735.1 serine protease -
  D3C60_RS04225 (D3C60_04225) - 825093..825245 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  D3C60_RS04230 (D3C60_04230) - 825369..825638 (+) 270 WP_003155492.1 YfhJ family protein -
  D3C60_RS04235 (D3C60_04235) - 825770..826297 (+) 528 WP_032867733.1 SH3 domain-containing protein -
  D3C60_RS04240 (D3C60_04240) - 826383..826718 (+) 336 WP_007408558.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31035.23 Da        Isoelectric Point: 6.2735

>NTDB_id=313899 D3C60_RS04200 WP_032867741.1 821193..821984(+) (recX) [Bacillus velezensis strain BIM B-439D]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYANTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINTALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=313899 D3C60_RS04200 WP_032867741.1 821193..821984(+) (recX) [Bacillus velezensis strain BIM B-439D]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTTAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAACACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATACCGCTCTGGAGCAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTTAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

78.327

100

0.783

Multiple sequence alignment