Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CDG61_RS15510 Genome accession   NZ_CP032143
Coordinates   3168726..3170948 (+) Length   740 a.a.
NCBI ID   WP_087550442.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3163726..3175948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS15485 (CDG61_15485) lnt 3163763..3165319 (+) 1557 WP_087550445.1 apolipoprotein N-acyltransferase -
  CDG61_RS15490 (CDG61_15490) - 3165512..3165946 (+) 435 WP_087550444.1 GFA family protein -
  CDG61_RS15495 (CDG61_15495) - 3165990..3166325 (-) 336 WP_087550443.1 hypothetical protein -
  CDG61_RS15500 (CDG61_15500) gspG 3166883..3167320 (-) 438 WP_087512664.1 type II secretion system major pseudopilin GspG -
  CDG61_RS15505 (CDG61_15505) gspF 3167370..3168575 (-) 1206 WP_087512663.1 type II secretion system inner membrane protein GspF -
  CDG61_RS15510 (CDG61_15510) priA 3168726..3170948 (+) 2223 WP_087550442.1 primosomal protein N' Machinery gene
  CDG61_RS15515 (CDG61_15515) - 3170981..3172822 (+) 1842 WP_087550441.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CDG61_RS15520 (CDG61_15520) hslO 3172872..3173747 (+) 876 WP_087550440.1 Hsp33 family molecular chaperone HslO -
  CDG61_RS15525 (CDG61_15525) - 3173919..3174356 (+) 438 WP_087550439.1 DUF2147 domain-containing protein -
  CDG61_RS15530 (CDG61_15530) - 3174602..3175057 (+) 456 WP_087550438.1 DUF2147 domain-containing protein -
  CDG61_RS15535 (CDG61_15535) - 3175256..3175717 (+) 462 WP_087550437.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83680.41 Da        Isoelectric Point: 8.5087

>NTDB_id=313875 CDG61_RS15510 WP_087550442.1 3168726..3170948(+) (priA) [Acinetobacter sp. WCHAc010052]
MPDLTSASAPVFRIRVAVPVYLYDSFDYMLSEQDYQKAQPGARVLVSFGRQNLTGIVTEKIAPDAPLSSEFKLKYITELL
DDEPLLDTQTLNLLTWSAQYYQFPIGEVMHTALPALLRQGKPYNLLARMWKLLDEHADARLKRSERQQEAYKILKLHPSG
TAENILNLAGVETATLKALEKKGICECVLEAQNFSPQAVSLAQMPLTANEDQKKAVQSILKAQKKYQAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCDIAMLHSGLNDSRRLQAWQAAQTGKASIILGTRSAIFTPL
PRLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLQNCPVILGSATPSIDSYALVDQGKMTVLELNQRAGSAQMPKIHI
LDLKIAQKEHGISKILLAEMKKRLDKKEQVLVFLNRRGYAPVLICESCAWQARCPHCDANFTVHYQPYSHLHCHHCGTIH
RLPEHCPACQHTELKSIGMGTAKVEESLNSLFPDHEVIRVDRDSTSRVGSWQKIYDKIHKSEPVILLGTQMLAKGHHFPY
VTLVAVLDIDAGLLSVDFRAPERTAQLIVQVSGRAGRGEHKGDVYLQTLRPDHPLLLTLVNENYRAFAQQTLTERKNALL
PPYRYAALIRCESSSQQQNQDFLQEHAGLLRQRSDLNADIWGPIPAPMERKAGRWQAHMVLLSQDRARLHYHMRSWWQNM
LHQKPSTMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=313875 CDG61_RS15510 WP_087550442.1 3168726..3170948(+) (priA) [Acinetobacter sp. WCHAc010052]
ATGCCAGACCTAACTTCCGCCTCTGCTCCAGTTTTTCGCATTCGGGTTGCTGTACCAGTTTACCTGTATGACAGTTTTGA
CTATATGCTCAGTGAACAGGACTATCAGAAAGCCCAGCCAGGTGCCCGGGTGCTTGTGTCATTTGGAAGACAGAATCTGA
CGGGGATTGTGACTGAAAAAATTGCGCCCGATGCTCCACTCAGTTCAGAGTTTAAACTGAAATACATTACTGAACTGCTG
GATGATGAACCACTGCTGGATACTCAGACCTTAAATTTACTGACATGGTCGGCACAGTACTATCAGTTCCCTATCGGTGA
GGTCATGCACACTGCATTACCTGCGCTGCTGCGCCAGGGTAAACCCTATAACCTGCTCGCCAGGATGTGGAAACTGCTGG
ATGAACATGCAGATGCCCGTCTGAAACGCTCTGAAAGACAGCAGGAAGCCTATAAGATTCTTAAACTGCACCCGTCTGGA
ACAGCAGAAAATATTCTGAATCTGGCAGGCGTTGAAACCGCCACACTCAAAGCTCTGGAAAAAAAAGGCATCTGTGAATG
TGTGCTGGAAGCACAGAATTTCAGTCCTCAGGCTGTCAGCCTGGCTCAGATGCCGCTGACTGCCAACGAAGATCAGAAAA
AAGCAGTTCAGAGCATTCTGAAAGCACAAAAAAAATATCAGGCATTTCTGCTCGATGGTTTAACAGGCAGCGGTAAAACT
GAAGTGTATCTTCAGGTGATGCAGGAAGTACTGAAACAGGGTAAACAGGTGCTGGTACTGGTACCTGAAATTGGTCTGAC
ACCTCAGACCATCAGCCGTTTTCAGTCGCGTTTTCATTGTGATATTGCCATGCTGCATTCGGGTCTGAATGATTCCCGAC
GTCTTCAGGCATGGCAGGCAGCTCAGACAGGTAAAGCCTCGATTATCCTGGGTACACGTTCAGCCATTTTTACCCCGCTG
CCTCGATTGGGACTGATTGTGCTGGATGAAGAACATGATCTTTCCTTCAAGCAGCAGGAAGGTTTCCGCTACCATGCCCG
TGATGTCGCTCTGTATAGAGCACATCTTCAGAACTGTCCTGTGATTCTGGGTAGTGCCACACCAAGTATAGACAGCTATG
CCCTTGTGGATCAGGGTAAAATGACTGTGCTGGAGCTGAATCAGCGGGCAGGTTCTGCTCAGATGCCTAAAATTCATATT
CTTGATTTAAAAATTGCACAGAAAGAGCATGGCATCAGTAAAATTCTGCTGGCTGAAATGAAAAAACGGCTGGATAAAAA
AGAGCAGGTACTGGTGTTTCTGAACCGTCGTGGCTACGCTCCTGTGCTGATCTGTGAAAGCTGTGCCTGGCAAGCCCGAT
GTCCACACTGTGATGCCAATTTTACGGTTCACTATCAGCCGTATTCACATCTGCACTGCCATCACTGCGGTACCATACAC
CGTTTACCTGAGCACTGCCCTGCCTGTCAGCACACTGAGCTGAAATCCATTGGAATGGGCACAGCCAAAGTAGAGGAAAG
CCTGAACAGCTTATTCCCTGATCATGAGGTGATTCGGGTCGATCGGGATTCGACCAGTCGTGTTGGCAGCTGGCAAAAAA
TTTATGACAAAATTCATAAAAGTGAACCCGTCATTTTGCTCGGAACACAGATGCTTGCCAAAGGGCATCATTTCCCTTAT
GTGACCCTGGTTGCCGTACTGGATATAGATGCCGGACTGCTGAGTGTTGATTTTCGTGCGCCTGAACGCACAGCTCAATT
GATTGTTCAGGTTTCAGGACGTGCAGGACGCGGTGAACACAAAGGAGATGTTTATTTACAGACGCTCAGACCTGATCATC
CTTTACTGCTGACTCTGGTCAATGAAAACTATCGGGCTTTTGCACAGCAGACACTGACCGAACGTAAAAATGCTTTACTG
CCACCCTATCGCTATGCAGCCCTGATCCGCTGTGAATCATCCAGTCAGCAGCAGAATCAGGATTTTTTACAGGAACATGC
AGGGCTGTTACGTCAGCGCAGTGACCTGAATGCAGATATCTGGGGACCCATTCCTGCACCAATGGAACGCAAAGCAGGAC
GCTGGCAGGCACATATGGTACTGTTATCGCAGGATCGGGCACGACTGCATTATCATATGCGCAGCTGGTGGCAGAACATG
CTGCATCAGAAACCCTCCACGATGAAACTGACACTGGATATTGACCCTCAGGAACTCAGCTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.268

98.919

0.715

Multiple sequence alignment