Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   CDG61_RS09930 Genome accession   NZ_CP032143
Coordinates   1972027..1972653 (-) Length   208 a.a.
NCBI ID   WP_087551006.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHAc010052     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1967027..1977653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS09900 (CDG61_09900) - 1967417..1967848 (-) 432 WP_087551012.1 SRPBCC family protein -
  CDG61_RS09905 (CDG61_09905) tadA 1967931..1968452 (-) 522 WP_087551011.1 tRNA adenosine(34) deaminase TadA -
  CDG61_RS09910 (CDG61_09910) - 1968460..1969584 (-) 1125 WP_087551010.1 enoyl-CoA hydratase/isomerase family protein -
  CDG61_RS09915 (CDG61_09915) ung 1969581..1970294 (-) 714 WP_087551009.1 uracil-DNA glycosylase -
  CDG61_RS09920 (CDG61_09920) - 1970332..1970931 (-) 600 WP_087551008.1 6-pyruvoyl trahydropterin synthase family protein -
  CDG61_RS09925 (CDG61_09925) gspK 1971034..1972026 (-) 993 WP_087551007.1 type II secretion system minor pseudopilin GspK -
  CDG61_RS09930 (CDG61_09930) xcpW 1972027..1972653 (-) 627 WP_087551006.1 type II secretion system minor pseudopilin GspJ Machinery gene
  CDG61_RS09935 (CDG61_09935) xcpV 1972650..1973033 (-) 384 WP_087512292.1 type II secretion system minor pseudopilin GspI Machinery gene
  CDG61_RS09940 (CDG61_09940) - 1973020..1973580 (-) 561 WP_087551005.1 pilus assembly FimT family protein -
  CDG61_RS09945 (CDG61_09945) - 1973589..1974203 (-) 615 WP_087551004.1 TetR/AcrR family transcriptional regulator -
  CDG61_RS09950 (CDG61_09950) - 1974253..1975026 (-) 774 WP_087551003.1 TatD family hydrolase -
  CDG61_RS09955 (CDG61_09955) - 1975052..1975393 (-) 342 WP_087512296.1 PilZ domain-containing protein -
  CDG61_RS09960 (CDG61_09960) - 1975405..1976388 (-) 984 WP_087551002.1 DNA polymerase III subunit delta' -
  CDG61_RS09965 (CDG61_09965) kdsB 1976404..1977165 (-) 762 WP_087551001.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23410.80 Da        Isoelectric Point: 5.3514

>NTDB_id=313868 CDG61_RS09930 WP_087551006.1 1972027..1972653(-) (xcpW) [Acinetobacter sp. WCHAc010052]
MSRSKGFTLVELLVAIAIFAVLSALGWKVFDYLSKVSERNEMHEANLSALQEAHQQILRDSLQIAPLTANIKGETAPALI
LQNGVLIFSKTGVTDPLAQGTPPDERVEYRYRADEKKLYRLKYSYLNQTGQEQPVSSVLLENVEQYDVSVLNPAELRSWP
EATADAENVQQKALLPRGIMLRLTVQGISYQWLYSLLNTDFLKQEAVK

Nucleotide


Download         Length: 627 bp        

>NTDB_id=313868 CDG61_RS09930 WP_087551006.1 1972027..1972653(-) (xcpW) [Acinetobacter sp. WCHAc010052]
ATGAGCAGGTCAAAAGGGTTTACCCTTGTTGAGCTGCTGGTTGCAATTGCAATTTTCGCAGTGCTCTCTGCACTCGGCTG
GAAAGTGTTTGATTATCTCTCGAAGGTCAGTGAGCGTAATGAAATGCATGAGGCGAATTTATCAGCCTTACAGGAAGCTC
ATCAGCAGATTCTCAGAGACAGTCTTCAGATTGCACCATTAACTGCAAATATCAAAGGTGAAACAGCGCCCGCGCTGATT
CTGCAGAATGGTGTGCTGATTTTCAGTAAAACAGGCGTTACAGATCCTCTGGCTCAGGGCACACCACCCGATGAGCGGGT
GGAATACCGCTATCGTGCAGATGAAAAAAAACTCTATAGATTAAAATATAGTTACCTGAATCAGACAGGGCAGGAACAGC
CGGTTTCGAGTGTACTGCTTGAAAATGTTGAACAGTATGATGTCTCAGTACTGAATCCAGCAGAGCTGAGAAGCTGGCCT
GAGGCGACGGCAGATGCAGAAAATGTTCAGCAGAAAGCATTGTTGCCTAGAGGGATTATGCTGAGACTGACTGTACAGGG
GATATCCTATCAGTGGTTGTATAGCCTGTTGAATACAGACTTTCTGAAACAGGAAGCCGTAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.454

99.519

0.582

Multiple sequence alignment