Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CDG61_RS02990 Genome accession   NZ_CP032143
Coordinates   539832..540710 (+) Length   292 a.a.
NCBI ID   WP_087512746.1    Uniprot ID   A0A3B7LY88
Organism   Acinetobacter sp. WCHAc010052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534832..545710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS02970 (CDG61_02970) - 535856..537187 (+) 1332 WP_087549989.1 alpha/beta fold hydrolase -
  CDG61_RS02975 (CDG61_02975) - 537372..537947 (-) 576 WP_087512749.1 xanthine phosphoribosyltransferase -
  CDG61_RS02980 (CDG61_02980) - 538039..538752 (-) 714 WP_087549990.1 DUF3108 domain-containing protein -
  CDG61_RS02985 (CDG61_02985) - 538911..539600 (-) 690 WP_087549991.1 hypothetical protein -
  CDG61_RS02990 (CDG61_02990) tonB2 539832..540710 (+) 879 WP_087512746.1 energy transducer TonB Machinery gene
  CDG61_RS02995 (CDG61_02995) - 540718..541131 (-) 414 WP_087549992.1 hypothetical protein -
  CDG61_RS03000 (CDG61_03000) - 541277..541570 (-) 294 WP_087549993.1 antibiotic biosynthesis monooxygenase family protein -
  CDG61_RS03005 (CDG61_03005) ybeY 541685..542170 (-) 486 WP_087549994.1 rRNA maturation RNase YbeY -
  CDG61_RS03010 (CDG61_03010) - 542189..543271 (-) 1083 WP_087549995.1 PhoH family protein -
  CDG61_RS03015 (CDG61_03015) miaB 543311..544765 (-) 1455 WP_087549996.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33247.94 Da        Isoelectric Point: 9.1308

>NTDB_id=313858 CDG61_RS02990 WP_087512746.1 539832..540710(+) (tonB2) [Acinetobacter sp. WCHAc010052]
MLRKINFSPLVNNWWKDPVFATAVIMAAVLHLLVLSVQFTMSEPQDAAVREIAVTMRPSETEVKNADFLAQADQQGSGTF
REAHRMSSDMPAPMIDQSAGEQKQESREQMQQKKELSFEEKVLMTTLSWQKEAEQNRRKKAADEMNSQYQAKAAMIASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDMTAAYMEKFRQKVEFYGNRYYPDLAKAQQLAGEVRLMVILNQNGGIRAIRLIE
GSGHSVLDEAAKASVRKAAPFGAFDVKMKDISELRIVRTWRFDPADAEFEVN

Nucleotide


Download         Length: 879 bp        

>NTDB_id=313858 CDG61_RS02990 WP_087512746.1 539832..540710(+) (tonB2) [Acinetobacter sp. WCHAc010052]
ATGCTCAGGAAAATTAACTTTTCTCCACTGGTGAATAACTGGTGGAAAGACCCTGTTTTTGCAACAGCAGTGATCATGGC
TGCCGTTCTGCATCTGCTGGTGTTGTCTGTGCAGTTCACCATGTCCGAACCACAGGATGCAGCGGTCAGGGAAATTGCGG
TCACCATGCGTCCCAGTGAAACGGAAGTTAAAAATGCCGATTTTCTAGCACAGGCAGATCAGCAGGGTTCGGGAACATTC
CGTGAAGCACACCGTATGTCCAGTGATATGCCTGCTCCAATGATTGACCAGAGTGCAGGGGAGCAGAAGCAGGAAAGTCG
GGAGCAGATGCAGCAGAAAAAAGAGCTGAGCTTCGAAGAAAAAGTACTGATGACCACGCTCAGCTGGCAGAAAGAAGCGG
AGCAGAACCGTCGTAAAAAAGCGGCAGATGAAATGAACAGCCAGTATCAGGCAAAGGCAGCCATGATTGCCAGTCTGGAA
GCACAGTATCTGCAGCGTCAGCAGAACTTCAGCCGTCAGCAGAAAATTAAAACTGTGGATGGTATTCAGGCTAAACAGGA
TATGACGGCTGCCTATATGGAAAAATTCAGGCAAAAAGTCGAGTTTTACGGTAACCGTTATTATCCAGATCTGGCAAAAG
CACAGCAGCTTGCTGGGGAAGTGCGCCTGATGGTGATTCTGAATCAGAACGGCGGAATCCGTGCTATTCGCCTGATTGAA
GGCTCAGGTCATTCCGTGCTTGATGAAGCAGCAAAAGCATCTGTCCGTAAAGCAGCTCCATTTGGGGCATTTGATGTGAA
AATGAAAGATATTTCTGAACTTCGAATTGTCAGAACGTGGCGTTTTGATCCTGCAGATGCTGAGTTTGAGGTGAACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LY88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

68.041

99.658

0.678

Multiple sequence alignment