Detailed information NTG0313854

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CDG61_RS02020
• Genome accession: NZ_CP032143
• Coordinates: 350291..350728 (+)
• Length: 145 a.a.
• NCBI ID: WP_087549870.1
• Uniprot ID: -
• Organism: Acinetobacter sp. WCHAc010052
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 345291..355728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG61_RS02010 (CDG61_02010)	-	345577..349719 (+)	4143	WP_087549869.1	pilus assembly protein	-
CDG61_RS02015 (CDG61_02015)	-	349730..350290 (+)	561	WP_087550014.1	type IV pilin protein	-
CDG61_RS02020 (CDG61_02020)	comF	350291..350728 (+)	438	WP_087549870.1	type IV pilin protein	Machinery gene
CDG61_RS02025 (CDG61_02025)	-	351043..351510 (+)	468	WP_228199601.1	pilus assembly FimT family protein	-
CDG61_RS02030 (CDG61_02030)	pilV	351520..352050 (+)	531	WP_087549872.1	type IV pilus modification protein PilV	-
CDG61_RS02035 (CDG61_02035)	-	352040..353062 (+)	1023	WP_416240704.1	PilW family protein	-
CDG61_RS02040 (CDG61_02040)	-	353062..353775 (+)	714	WP_087549874.1	pilus assembly PilX family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16106.35 Da
• Isoelectric Point: 8.8763

>NTDB_id=313854 CDG61_RS02020 WP_087549870.1 350291..350728(+) (comF) [Acinetobacter sp. WCHAc010052]
MHQKIKGFTLIEMMVVIAIIGILAAIAYPTYNNYKVRTNRTDLQNELSLIAQKLQAYHLVHNSYKNADLSVAGYTAPAKY
PKQDMAHYSLALTVDSDFKGWKLEATPVSSIQNGDGKVCLNDQGYKSWQKGQVSCSLSSTSGWDN

Nucleotide

• Length: 438 bp

>NTDB_id=313854 CDG61_RS02020 WP_087549870.1 350291..350728(+) (comF) [Acinetobacter sp. WCHAc010052]
ATGCATCAGAAAATCAAAGGATTTACCTTAATTGAAATGATGGTGGTGATTGCAATTATTGGTATTCTTGCCGCGATTGC
ATATCCGACATACAACAACTACAAAGTCCGAACCAACCGAACGGATTTACAGAATGAATTAAGCCTGATTGCACAGAAAT
TACAGGCTTATCACCTTGTTCATAACAGTTATAAAAATGCAGATCTTTCAGTGGCAGGTTATACCGCACCGGCAAAATAT
CCGAAGCAGGATATGGCGCATTATTCATTGGCGCTGACAGTGGATTCAGATTTTAAAGGGTGGAAACTGGAGGCAACACC
GGTATCGTCTATTCAGAATGGAGATGGAAAAGTCTGCCTGAATGATCAGGGCTATAAATCCTGGCAAAAAGGGCAGGTCA
GCTGTTCACTCAGCAGTACATCTGGATGGGATAACTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (4-28)

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (29-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	56.115	95.862	0.538
pilE	Acinetobacter baumannii D1279779	45.652	95.172	0.434