Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   CDG60_RS15520 Genome accession   NZ_CP032134
Coordinates   3063006..3063884 (-) Length   292 a.a.
NCBI ID   WP_087512746.1    Uniprot ID   A0A3B7LY88
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3058006..3068884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS15495 (CDG60_15495) miaB 3058947..3060401 (+) 1455 WP_087512741.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  CDG60_RS15500 (CDG60_15500) - 3060441..3061523 (+) 1083 WP_087512742.1 PhoH family protein -
  CDG60_RS15505 (CDG60_15505) ybeY 3061542..3062027 (+) 486 WP_087512743.1 rRNA maturation RNase YbeY -
  CDG60_RS15510 (CDG60_15510) - 3062146..3062439 (+) 294 WP_087512744.1 antibiotic biosynthesis monooxygenase -
  CDG60_RS15515 (CDG60_15515) - 3062585..3062998 (+) 414 WP_087512745.1 hypothetical protein -
  CDG60_RS15520 (CDG60_15520) tonB2 3063006..3063884 (-) 879 WP_087512746.1 energy transducer TonB Machinery gene
  CDG60_RS15525 (CDG60_15525) - 3064116..3064805 (+) 690 WP_087512747.1 hypothetical protein -
  CDG60_RS15530 (CDG60_15530) - 3064964..3065677 (+) 714 WP_087512748.1 DUF3108 domain-containing protein -
  CDG60_RS15535 (CDG60_15535) - 3065769..3066344 (+) 576 WP_087512749.1 xanthine phosphoribosyltransferase -
  CDG60_RS15540 (CDG60_15540) - 3066540..3067865 (-) 1326 WP_087512750.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33247.94 Da        Isoelectric Point: 9.1308

>NTDB_id=313834 CDG60_RS15520 WP_087512746.1 3063006..3063884(-) (tonB2) [Acinetobacter chinensis strain WCHAc010005]
MLRKINFSPLVNNWWKDPVFATAVIMAAVLHLLVLSVQFTMSEPQDAAVREIAVTMRPSETEVKNADFLAQADQQGSGTF
REAHRMSSDMPAPMIDQSAGEQKQESREQMQQKKELSFEEKVLMTTLSWQKEAEQNRRKKAADEMNSQYQAKAAMIASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDMTAAYMEKFRQKVEFYGNRYYPDLAKAQQLAGEVRLMVILNQNGGIRAIRLIE
GSGHSVLDEAAKASVRKAAPFGAFDVKMKDISELRIVRTWRFDPADAEFEVN

Nucleotide


Download         Length: 879 bp        

>NTDB_id=313834 CDG60_RS15520 WP_087512746.1 3063006..3063884(-) (tonB2) [Acinetobacter chinensis strain WCHAc010005]
ATGCTCAGGAAAATTAACTTTTCTCCACTGGTGAATAACTGGTGGAAAGACCCTGTTTTTGCAACAGCAGTGATCATGGC
TGCCGTTCTGCATTTACTGGTGTTGTCTGTGCAGTTCACCATGTCCGAACCACAGGATGCAGCGGTCAGGGAAATTGCGG
TCACCATGCGCCCGAGTGAGACGGAAGTTAAAAATGCCGATTTTCTAGCACAGGCAGATCAGCAGGGTTCAGGAACATTC
CGTGAAGCACATCGTATGTCCAGTGATATGCCTGCTCCAATGATTGACCAGAGTGCAGGGGAGCAGAAGCAGGAAAGTCG
GGAGCAGATGCAGCAGAAAAAAGAGCTGAGCTTCGAAGAAAAAGTACTGATGACCACGCTCAGCTGGCAGAAAGAAGCGG
AGCAGAACCGTCGTAAAAAAGCGGCAGATGAAATGAACAGCCAGTATCAGGCAAAGGCAGCCATGATTGCCAGTCTGGAA
GCACAGTATCTGCAGCGTCAGCAGAACTTCAGCCGTCAGCAGAAAATTAAAACTGTGGATGGTATTCAGGCTAAACAGGA
TATGACAGCTGCTTATATGGAAAAATTCCGGCAAAAAGTCGAGTTTTACGGTAACCGCTATTATCCCGACCTGGCAAAAG
CACAGCAGCTAGCTGGAGAAGTACGCCTGATGGTGATTCTGAATCAGAACGGCGGAATCCGTGCTATTCGCCTGATTGAA
GGTTCAGGTCATTCTGTGCTTGATGAGGCAGCAAAAGCATCTGTCCGTAAAGCAGCTCCATTTGGTGCATTTGATGTAAA
AATGAAAGATATTTCTGAACTTCGAATTGTCAGAACATGGCGTTTTGATCCTGCAGATGCTGAGTTTGAGGTGAACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LY88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

68.041

99.658

0.678

Multiple sequence alignment