Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   CDG60_RS02725 Genome accession   NZ_CP032134
Coordinates   413869..416091 (-) Length   740 a.a.
NCBI ID   WP_087512662.1    Uniprot ID   A0A3B7LZ58
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408869..421091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS02700 (CDG60_02700) - 409101..409562 (-) 462 WP_087512657.1 DUF2147 domain-containing protein -
  CDG60_RS02705 (CDG60_02705) - 409761..410216 (-) 456 WP_087512658.1 DUF2147 domain-containing protein -
  CDG60_RS02710 (CDG60_02710) - 410462..410911 (-) 450 WP_227542913.1 DUF2147 domain-containing protein -
  CDG60_RS02715 (CDG60_02715) - 411070..411945 (-) 876 WP_087512660.1 Hsp33 family molecular chaperone HslO -
  CDG60_RS02720 (CDG60_02720) - 411995..413836 (-) 1842 WP_087512661.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  CDG60_RS02725 (CDG60_02725) priA 413869..416091 (-) 2223 WP_087512662.1 primosomal protein N' Machinery gene
  CDG60_RS02730 (CDG60_02730) gspF 416242..417447 (+) 1206 WP_087512663.1 type II secretion system inner membrane protein GspF -
  CDG60_RS02735 (CDG60_02735) gspG 417497..417934 (+) 438 WP_087512664.1 type II secretion system major pseudopilin GspG -
  CDG60_RS18370 (CDG60_02740) - 417982..418185 (-) 204 WP_087512665.1 hypothetical protein -
  CDG60_RS02745 (CDG60_02745) - 418492..418827 (+) 336 WP_087512666.1 hypothetical protein -
  CDG60_RS02750 (CDG60_02750) - 418872..419306 (-) 435 WP_087512667.1 GFA family protein -
  CDG60_RS02755 (CDG60_02755) lnt 419499..421055 (-) 1557 WP_087512668.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83664.47 Da        Isoelectric Point: 8.4615

>NTDB_id=313818 CDG60_RS02725 WP_087512662.1 413869..416091(-) (priA) [Acinetobacter chinensis strain WCHAc010005]
MPDLTSASAPVFRIRVAVPVYLYDCFDYMLSEQDYQKAQPGARVLVSFGRQNLTGIVTEKIAPDAPLSSEFKLKYITELL
DDEPLLDTQTLNLLTWSAQYYQFPIGEVMHTALPALLRQGKPYNLLARMWKLLDEHADARLKRSERQQEAYKILKLHPSG
TAENILNLAGVETATLKALEKKGICECVLEAQNFSPQAVSLAQMPLTANEDQKKAVQGILKAQKKYQAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCDIAMLHSGLNDSRRLQAWQAAQTGKASIILGTRSAIFTPL
PRLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLQNCPVILGSATPSIDSYALVDQGKMTVLELNQRAGSAQMPKIHI
LDLKIAQKEHGISKILLAEMKKRLDKKEQVLVFLNRRGYAPVLICESCAWQARCPHCDANFTVHYQPYSHLHCHHCGTIH
RLPDHCPACQHTELKSIGMGTAKVEESLNSLFPDHEVIRVDRDSTSRVGSWQKIYDKIHKSEPVILLGTQMLAKGHHFPY
VTLVAVLDIDAGLLSVDFRAPERTAQLIVQVSGRAGRGEHKGDVYLQTLRPDHPLLLTLVNENYRAFAQQTLIERKNALL
PPYRYAALIRCESSSQQQNQDFLQEHAGLLRQRSDLNADIWGPIPAPMERKAGRWQAHMVLLSQDRARLHYHMRSWWQNM
LHQKPSTMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=313818 CDG60_RS02725 WP_087512662.1 413869..416091(-) (priA) [Acinetobacter chinensis strain WCHAc010005]
ATGCCAGACCTAACTTCCGCCTCTGCTCCAGTTTTTCGCATTCGGGTTGCTGTACCAGTTTACCTGTATGACTGTTTTGA
CTATATGCTCAGTGAACAGGACTATCAGAAAGCCCAGCCAGGTGCCAGGGTGCTTGTGTCATTTGGAAGACAGAATCTGA
CGGGGATTGTGACTGAAAAAATTGCGCCTGATGCTCCACTCAGTTCAGAGTTTAAACTGAAATACATTACTGAACTGCTG
GATGATGAACCACTGCTGGATACTCAGACCTTAAATTTACTGACATGGTCGGCACAGTACTATCAGTTCCCTATCGGTGA
GGTCATGCACACTGCATTACCTGCACTGCTGCGCCAGGGTAAACCCTATAATCTGCTCGCCAGGATGTGGAAACTGCTGG
ACGAACATGCAGATGCCCGTCTGAAACGCTCTGAAAGACAGCAGGAAGCCTATAAAATTCTTAAACTGCACCCGTCTGGA
ACAGCAGAAAATATTCTGAATCTGGCAGGCGTTGAAACCGCCACACTCAAAGCTCTGGAAAAAAAAGGTATCTGTGAATG
TGTGCTAGAAGCACAGAATTTCAGTCCTCAGGCTGTCAGCCTGGCTCAGATGCCTCTGACTGCCAACGAAGATCAGAAAA
AAGCGGTTCAGGGTATTCTGAAAGCACAAAAAAAATATCAGGCATTTCTGCTCGATGGTTTAACAGGCAGCGGTAAAACT
GAAGTGTATCTTCAGGTGATGCAGGAAGTACTGAAACAGGGTAAACAGGTGCTGGTACTGGTACCTGAAATCGGTCTGAC
ACCTCAGACCATCAGCCGCTTTCAGTCACGTTTTCATTGTGATATTGCCATGCTTCATTCGGGTCTGAATGATTCCAGAC
GTCTTCAGGCATGGCAGGCAGCTCAGACAGGTAAAGCCTCAATTATACTGGGGACACGTTCAGCCATTTTTACCCCACTG
CCTCGACTGGGGCTGATTGTGCTGGATGAAGAACATGACCTTTCCTTCAAGCAGCAGGAAGGTTTCCGCTACCATGCCCG
TGATGTCGCTCTGTATAGAGCACATCTTCAGAACTGTCCTGTGATTCTGGGAAGTGCCACACCAAGTATAGACAGCTATG
CCCTTGTGGATCAGGGTAAAATGACTGTGCTGGAGCTGAATCAGCGGGCAGGTTCTGCTCAGATGCCTAAAATTCATATT
CTTGATTTAAAAATTGCACAGAAAGAGCATGGCATCAGTAAAATTCTGCTGGCTGAAATGAAAAAACGGCTGGATAAAAA
AGAACAGGTACTGGTGTTTCTGAACCGTCGGGGCTACGCTCCTGTACTGATCTGTGAAAGCTGTGCCTGGCAAGCCCGAT
GTCCGCACTGTGATGCCAATTTTACGGTTCACTATCAGCCGTATTCACATCTGCACTGCCATCACTGCGGTACCATACAC
CGTTTACCCGATCACTGCCCTGCCTGTCAGCACACTGAGCTGAAATCCATTGGAATGGGCACAGCCAAAGTAGAGGAAAG
CCTGAACAGCTTATTCCCTGATCATGAGGTGATTCGGGTCGATCGGGATTCGACCAGCCGTGTCGGCAGCTGGCAAAAAA
TTTATGACAAAATTCATAAAAGTGAACCCGTCATTTTGCTCGGAACACAGATGCTTGCCAAAGGGCATCATTTCCCTTAT
GTGACCCTGGTTGCTGTACTGGATATAGATGCCGGACTGCTGAGTGTTGATTTTCGTGCACCTGAACGCACAGCTCAATT
GATTGTTCAGGTTTCAGGACGTGCAGGACGCGGTGAACACAAAGGTGATGTTTATTTACAGACGCTCAGACCTGATCATC
CTTTACTGCTGACTCTGGTCAATGAAAACTACAGAGCTTTTGCACAGCAGACACTGATAGAACGTAAAAATGCTTTACTG
CCACCCTATCGCTATGCAGCTCTGATCCGCTGTGAATCATCCAGTCAGCAGCAGAATCAGGATTTTTTACAGGAACATGC
AGGGCTGTTACGTCAGCGCAGTGACCTGAATGCAGATATCTGGGGACCCATTCCTGCACCAATGGAACGTAAAGCAGGAC
GCTGGCAGGCACATATGGTACTGTTATCACAGGATCGGGCACGACTGCATTATCATATGCGCAGCTGGTGGCAGAACATG
CTGCATCAGAAACCCTCCACGATGAAACTGACACTGGATATTGACCCTCAGGAACTCAGCTGA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(211-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LZ58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.404

98.919

0.716

Multiple sequence alignment