Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   E3156_RS09690 Genome accession   NZ_CP038389
Coordinates   2016908..2018335 (-) Length   475 a.a.
NCBI ID   WP_000980540.1    Uniprot ID   A0A0H3JGG6
Organism   Escherichia coli O55:H7 strain DEC5B     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011908..2023335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3156_RS09660 (E3156_09820) yeeZ 2011963..2012787 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  E3156_RS09665 (E3156_09825) yeeY 2012833..2013762 (+) 930 WP_000803334.1 LysR substrate-binding domain-containing protein -
  E3156_RS09670 (E3156_09830) yoeI 2013977..2014039 (+) 63 WP_010723108.1 membrane protein YoeI -
  E3156_RS09675 (E3156_09835) plaP 2014029..2015387 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  E3156_RS09680 (E3156_09840) tsuA 2015566..2016624 (+) 1059 WP_000492327.1 thiosulfate utilization transporter TsuA/YeeE -
  E3156_RS09685 (E3156_09845) tsuB 2016638..2016865 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  E3156_RS09690 (E3156_09850) sbcB 2016908..2018335 (-) 1428 WP_000980540.1 exodeoxyribonuclease I Machinery gene
  E3156_RS09695 (E3156_09855) dacD 2018544..2019710 (+) 1167 WP_001303036.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  E3156_RS09700 (E3156_09860) sbmC 2019829..2020302 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  E3156_RS09705 (E3156_09865) yeeA 2020501..2021559 (+) 1059 WP_001202490.1 FUSC family protein -
  E3156_RS09710 (E3156_09870) tmaR 2021731..2022060 (+) 330 WP_000450409.1 DUF496 family protein -
  E3156_RS09715 (E3156_09875) - 2022161..2022343 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  E3156_RS09720 (E3156_09880) - 2022406..2022543 (+) 138 Protein_1923 transposase domain-containing protein -
  E3156_RS09725 (E3156_09885) - 2022832..2022924 (-) 93 Protein_1924 DUF957 domain-containing protein -
  E3156_RS09730 (E3156_09890) yeeW 2022958..2023152 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.77 Da        Isoelectric Point: 5.3498

>NTDB_id=313778 E3156_RS09690 WP_000980540.1 2016908..2018335(-) (sbcB) [Escherichia coli O55:H7 strain DEC5B]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=313778 E3156_RS09690 WP_000980540.1 2016908..2018335(-) (sbcB) [Escherichia coli O55:H7 strain DEC5B]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAACCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
TATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JGG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581