Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AMRN_RS08900 Genome accession   NZ_CP032101
Coordinates   1826601..1827950 (+) Length   449 a.a.
NCBI ID   WP_099310322.1    Uniprot ID   A0A347TLP1
Organism   Malaciobacter marinus strain JCM 15502     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821601..1832950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMRN_RS08880 (AMRN_1787) - 1822248..1822802 (-) 555 WP_099310320.1 YqiA/YcfP family alpha/beta fold hydrolase -
  AMRN_RS08885 (AMRN_1788) - 1822799..1823695 (-) 897 WP_228150788.1 DMT family transporter -
  AMRN_RS08890 (AMRN_1789) - 1823744..1824343 (-) 600 WP_196778517.1 Crp/Fnr family transcriptional regulator -
  AMRN_RS08895 (AMRN_1790) - 1824458..1826380 (-) 1923 WP_165772830.1 methyl-accepting chemotaxis protein -
  AMRN_RS08900 (AMRN_1791) radA 1826601..1827950 (+) 1350 WP_099310322.1 DNA repair protein RadA Machinery gene
  AMRN_RS08905 (AMRN_1792) - 1827980..1828429 (-) 450 WP_099310323.1 hypothetical protein -
  AMRN_RS08910 (AMRN_1793) - 1828426..1828731 (-) 306 WP_099310324.1 coiled coil domain-containing protein -
  AMRN_RS08915 (AMRN_1794) ybeY 1828871..1829290 (+) 420 WP_099310334.1 rRNA maturation RNase YbeY -
  AMRN_RS08920 (AMRN_1795) - 1829293..1830213 (+) 921 WP_099310325.1 calcium/sodium antiporter -
  AMRN_RS08925 (AMRN_1796) - 1830220..1830624 (-) 405 WP_099310326.1 Fur family transcriptional regulator -
  AMRN_RS08930 (AMRN_1797) - 1830823..1831260 (+) 438 WP_099310327.1 Dps family protein -
  AMRN_RS08935 (AMRN_1798) - 1831350..1832003 (+) 654 WP_099310328.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49279.73 Da        Isoelectric Point: 6.7571

>NTDB_id=313758 AMRN_RS08900 WP_099310322.1 1826601..1827950(+) (radA) [Malaciobacter marinus strain JCM 15502]
MAKKKRSLFECQHCGEQATKWLGKCPNCGAWDSFIELNEEQQEVLKKTTKLVSTTSKAKSITQVKQDDITRFSSNNSEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGNIAQSNKKVLYVSGEESAGQIKLRANRLEANHDDLYLLSEIKLEEIMD
ELLRENYEVVIIDSIQTIYSAALTSAPGSVSQVREITFELMRKAKDTDIAMFIIGHITKDGAIAGPRVLEHMVDTVLYFE
GDASKEIRMLRGFKNRFGSTSEIGIFEMTNEGLVSAKDIASKFFDKSKPQSGSALTVAMEGSRALILEVQALVTESTHPN
PKRSATGFDANRLNMLLALLEKKIDLPLNHYDVFVNISGGIRIKESSADLAVIASIISSFRDRPLSKESAFIGEVSLTGE
IKDVYSIDMRLKEAQAQGIKKAICAQKPSTKLEIKVFAVDEVTKMLELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=313758 AMRN_RS08900 WP_099310322.1 1826601..1827950(+) (radA) [Malaciobacter marinus strain JCM 15502]
ATGGCGAAAAAGAAAAGATCTTTATTTGAATGTCAACACTGTGGAGAACAAGCAACAAAGTGGTTAGGAAAATGTCCTAA
TTGTGGTGCTTGGGATAGCTTTATAGAATTAAATGAAGAACAACAAGAAGTTTTAAAAAAAACAACAAAACTAGTATCTA
CAACATCAAAAGCAAAATCAATCACTCAAGTCAAGCAAGATGATATCACAAGATTTAGTTCAAATAACAGTGAATTTGAC
TTAGTTTTAGGAGGAGGTATAGTTCCTGGAAGCTTAACATTAATTGGAGGAAGTCCAGGTGTTGGAAAATCAACTTTACT
TTTAAAAGTAGCTGGAAATATCGCACAAAGTAATAAAAAAGTTTTATATGTTTCAGGAGAAGAGAGTGCGGGACAAATAA
AACTAAGAGCAAATAGACTTGAAGCAAATCATGATGACTTATATTTATTAAGTGAAATTAAACTTGAAGAGATAATGGAT
GAATTATTAAGAGAAAATTATGAAGTAGTAATTATTGACTCTATACAAACAATTTATTCAGCAGCTTTAACTTCAGCTCC
TGGTTCAGTTTCACAAGTAAGAGAGATAACTTTTGAACTTATGAGAAAAGCAAAAGATACTGATATTGCTATGTTTATTA
TTGGACATATTACTAAAGATGGTGCAATTGCAGGTCCAAGAGTATTAGAGCATATGGTTGATACTGTTTTATATTTTGAA
GGTGATGCAAGTAAAGAAATACGAATGCTAAGAGGTTTTAAAAATAGATTTGGCTCAACATCAGAAATAGGTATTTTTGA
AATGACAAATGAGGGATTAGTTAGTGCAAAAGATATAGCTTCAAAATTTTTTGATAAATCTAAACCACAAAGTGGTTCTG
CTTTGACAGTTGCTATGGAAGGAAGTCGTGCACTTATTCTTGAAGTTCAAGCTTTAGTTACAGAAAGTACCCATCCAAAT
CCAAAAAGAAGTGCCACAGGCTTTGATGCAAATAGATTAAATATGCTTTTAGCACTACTTGAGAAAAAAATTGATTTACC
TTTAAACCATTATGATGTATTTGTAAATATAAGTGGAGGAATAAGAATAAAAGAGAGTTCTGCTGATTTAGCAGTAATTG
CAAGTATTATAAGCTCTTTTAGAGATAGACCATTATCAAAAGAGTCTGCATTTATTGGTGAAGTTTCATTAACTGGTGAG
ATAAAAGATGTATATTCAATTGATATGAGATTAAAAGAGGCTCAAGCACAAGGAATAAAAAAAGCAATATGTGCACAAAA
GCCATCAACAAAACTTGAAATAAAAGTTTTTGCTGTTGATGAAGTTACAAAAATGTTAGAACTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(347-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A347TLP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.186

100

0.486
  radA Streptococcus mitis NCTC 12261

46.239

100

0.465
  radA Streptococcus mitis SK321

46.239

100

0.465
  radA Streptococcus pneumoniae Rx1

46.239

100

0.465
  radA Streptococcus pneumoniae D39

46.239

100

0.465
  radA Streptococcus pneumoniae R6

46.239

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.239

100

0.465

Multiple sequence alignment