Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AMRN_RS04790 Genome accession   NZ_CP032101
Coordinates   966054..967886 (-) Length   610 a.a.
NCBI ID   WP_099312601.1    Uniprot ID   A0A347TJD8
Organism   Malaciobacter marinus strain JCM 15502     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 961054..972886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMRN_RS04765 (AMRN_0960) - 961150..962907 (+) 1758 WP_099312594.1 YgiQ family radical SAM protein -
  AMRN_RS04770 (AMRN_0961) - 962989..963558 (+) 570 WP_099312596.1 adenylate kinase -
  AMRN_RS04775 (AMRN_0962) - 963574..964353 (+) 780 WP_228150859.1 competence/damage-inducible protein A -
  AMRN_RS04780 (AMRN_0963) - 964356..965024 (-) 669 WP_099312598.1 tetratricopeptide repeat protein -
  AMRN_RS04785 (AMRN_0964) - 965021..966043 (-) 1023 WP_099312600.1 alanine racemase -
  AMRN_RS04790 (AMRN_0965) uvrC 966054..967886 (-) 1833 WP_099312601.1 excinuclease ABC subunit UvrC Machinery gene
  AMRN_RS04795 (AMRN_0966) - 967923..968831 (-) 909 WP_099312602.1 hypothetical protein -
  AMRN_RS04800 (AMRN_0967) - 968930..969697 (-) 768 WP_191282160.1 choline/ethanolamine kinase family protein -
  AMRN_RS04805 (AMRN_0968) pnuC 969681..970289 (-) 609 WP_322861998.1 nicotinamide riboside transporter PnuC -
  AMRN_RS04810 (AMRN_0969) - 970408..970686 (+) 279 WP_099312575.1 putative quinol monooxygenase -
  AMRN_RS04815 (AMRN_0970) - 970697..971332 (+) 636 WP_099312574.1 hypothetical protein -
  AMRN_RS04820 (AMRN_0971) - 971329..971829 (-) 501 WP_099312572.1 SprT-like domain-containing protein -
  AMRN_RS04825 (AMRN_0972) - 971833..972138 (-) 306 WP_228150938.1 J domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 71361.84 Da        Isoelectric Point: 9.4996

>NTDB_id=313757 AMRN_RS04790 WP_099312601.1 966054..967886(-) (uvrC) [Malaciobacter marinus strain JCM 15502]
MNLEEKLKELPNSAGVYQYFNKDGHLLYIGKAKVLKNRVKSYFKFTPNLAPADKLSPRIYKMITEVKSLEWIIAPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIVIDYKEDFPRLEITRKVLKDKNIKYFGPYSTGARDMLDSIYEIIPLVQKKSC
IKGKEACLFHQIKKCYAPCVGKISKEEYSKIVDEALEYIYNKNKLIKKLNERMLQYSEEFRFEEAMKIRDRIKTIEKSQI
HTGMDLASNDNLDLFAIKASKEKAVIVRMFFRDGKLASSNHDYLKINQKELDIDLNEAYKRAIINYYDNEIPLLPKEIVV
ADEITQEIEELQEFIKDRFEKNIPIIHPKRGKKTQIIKIAINNCNELLRLQNSNATTIYKQLQELLNLSYTPNRFECFDN
SHMMGQATVGAMITWEEKFIKADYRHYNLEAKDEYAQMKETLIRRVQSFEKNPAPDVWVIDGGETLLKLAIDIRNSVGVN
LDIIAIAKEKLDFKAHRAKGSAKDIIYFEENSNIKRVDLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKDDSKISLLQI
KGIGEAKVKKLLLYFGEFEKIKNASFDELKIVLNEKDASLLINYFKTLDN

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=313757 AMRN_RS04790 WP_099312601.1 966054..967886(-) (uvrC) [Malaciobacter marinus strain JCM 15502]
ATGAACTTAGAAGAAAAACTTAAAGAATTACCAAATAGTGCTGGTGTTTATCAGTACTTTAATAAAGATGGACACTTACT
TTATATAGGAAAAGCAAAAGTACTAAAAAATAGAGTCAAATCATATTTTAAATTTACTCCTAATTTAGCACCTGCTGATA
AATTAAGTCCTAGAATTTACAAAATGATAACAGAAGTGAAATCTTTAGAGTGGATTATTGCACCAAATGAACATGATGCA
CTTATACTTGAAAATTCACTTATTAAACAACTTAAACCAAAATACAATATTTTATTAAGAGATGATAAAACATATCCTTA
TATTGTTATTGATTATAAAGAAGATTTTCCAAGATTAGAAATAACAAGAAAAGTATTAAAAGATAAAAATATTAAATACT
TTGGTCCATATTCCACTGGTGCTAGAGATATGCTTGATAGTATTTATGAAATAATTCCTTTAGTACAAAAAAAATCTTGT
ATTAAAGGAAAAGAAGCTTGTCTTTTTCATCAAATAAAAAAGTGTTATGCTCCTTGTGTTGGAAAAATTTCAAAAGAAGA
GTATAGTAAAATAGTTGATGAAGCCTTAGAATATATATACAATAAAAATAAGTTAATTAAAAAATTAAATGAAAGAATGC
TTCAATACTCAGAAGAGTTTAGATTTGAAGAAGCTATGAAAATTAGAGATAGAATTAAAACAATTGAAAAATCTCAAATC
CATACAGGAATGGATTTAGCAAGTAATGATAATCTAGATTTATTTGCAATAAAAGCATCTAAAGAAAAAGCGGTAATAGT
AAGAATGTTTTTTAGAGATGGTAAGTTAGCTTCAAGTAACCATGACTATTTAAAAATAAATCAAAAAGAGCTAGACATAG
ACCTAAATGAAGCATATAAAAGAGCAATAATTAACTATTATGACAATGAAATTCCTTTACTACCAAAAGAGATAGTTGTA
GCTGATGAGATAACACAAGAAATTGAAGAGCTTCAAGAGTTTATAAAAGATAGATTTGAAAAAAATATCCCAATCATTCA
TCCAAAAAGAGGGAAGAAAACACAAATTATAAAAATTGCAATAAATAACTGTAATGAGCTTTTAAGACTTCAAAATAGTA
ATGCAACTACTATTTATAAACAACTACAAGAGTTATTAAACCTTTCATATACACCAAATAGATTTGAATGCTTTGATAAC
TCACATATGATGGGTCAAGCAACAGTTGGCGCAATGATTACTTGGGAAGAGAAGTTTATAAAAGCAGATTATAGACATTA
TAATCTTGAAGCAAAAGATGAATATGCACAAATGAAAGAAACACTAATAAGAAGAGTACAAAGTTTTGAAAAAAATCCAG
CTCCTGATGTTTGGGTTATTGATGGAGGAGAAACTTTATTAAAACTTGCTATTGATATAAGAAACTCTGTGGGAGTAAAT
CTTGATATAATTGCAATTGCAAAAGAAAAACTTGATTTTAAAGCACATAGAGCAAAAGGAAGTGCAAAAGATATAATCTA
TTTTGAAGAAAATAGTAATATAAAAAGAGTAGATTTACTTCCAAGTGATAAAAGATTACAATTTATTCAAAGACTAAGAG
ATGAAGCACATAGATTTGCAATCTCTTTTCATAAAAAACAAAAAAGAAAAGATGATAGTAAAATATCTTTACTTCAAATA
AAAGGAATTGGTGAAGCTAAAGTCAAAAAACTTCTTTTATATTTTGGAGAATTTGAAAAAATAAAAAATGCATCTTTTGA
TGAACTAAAAATTGTTTTAAATGAAAAGGATGCTTCATTATTAATAAACTATTTTAAAACATTAGATAACTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-541)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A347TJD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.003

98.033

0.5

Multiple sequence alignment