Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ASUIS_RS08765 Genome accession   NZ_CP032100
Coordinates   1698245..1699594 (+) Length   449 a.a.
NCBI ID   WP_118886684.1    Uniprot ID   A0AAD0SSJ6
Organism   Arcobacter suis CECT 7833     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1693245..1704594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUIS_RS08750 (ASUIS_1687) - 1696060..1696623 (-) 564 WP_118886681.1 YqiA/YcfP family alpha/beta fold hydrolase -
  ASUIS_RS08755 (ASUIS_1688) - 1696683..1697666 (+) 984 WP_192894480.1 lipid A deacylase LpxR family protein -
  ASUIS_RS08760 (ASUIS_1689) - 1697663..1698145 (-) 483 WP_118886683.1 ribonuclease HI -
  ASUIS_RS08765 (ASUIS_1690) radA 1698245..1699594 (+) 1350 WP_118886684.1 DNA repair protein RadA Machinery gene
  ASUIS_RS08770 (ASUIS_1691) ybeY 1699603..1700022 (+) 420 WP_118886685.1 rRNA maturation RNase YbeY -
  ASUIS_RS08775 (ASUIS_1692) - 1700046..1700450 (-) 405 WP_118886686.1 Fur family transcriptional regulator -
  ASUIS_RS08780 (ASUIS_1693) - 1700710..1701369 (+) 660 WP_118886687.1 ferritin family protein -
  ASUIS_RS08785 (ASUIS_1694) - 1701449..1703035 (+) 1587 WP_118886688.1 endonuclease/exonuclease/phosphatase family protein -
  ASUIS_RS08790 (ASUIS_1695) murJ 1703035..1704336 (+) 1302 WP_118886689.1 murein biosynthesis integral membrane protein MurJ -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49351.72 Da        Isoelectric Point: 6.3804

>NTDB_id=313751 ASUIS_RS08765 WP_118886684.1 1698245..1699594(+) (radA) [Arcobacter suis CECT 7833]
MAKKKISLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKHSSKIINTTSKARPITEIEQDDVARFSSFNDEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSISKSGKKVLYVSGEESAGQIKLRANRLDANHNDLFLLSEIKLEEIQD
ELLRQNYEVVIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKAQSGSALTVVMEGSRAIILEVQALVTESTYPN
PKRSATGFDANRLTMLLALLEKKIDLPLNNYDVFINISGGIKIKESSADLAVIAAIISSYRDRPISKESAFIGEVSLTGE
IKDVYSIDLRLKEAQAQGMKKAVIAQKTNLKLDIKTYAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=313751 ASUIS_RS08765 WP_118886684.1 1698245..1699594(+) (radA) [Arcobacter suis CECT 7833]
ATGGCAAAAAAGAAAATATCACTTTTTGAGTGTCAACATTGTGGAGAACAATCTACAAAATGGCTAGGAAAGTGTCCAAA
TTGTGGTTCATGGGATTCATTTATAGAATTAAATCAAGAACAACAAGAGGTTTTAAAACACTCATCAAAAATTATAAATA
CAACATCAAAAGCTCGACCAATTACTGAAATCGAACAAGATGATGTAGCAAGATTTTCCTCTTTTAATGATGAATTTGAT
TTAGTTTTAGGTGGGGGAATAGTTCCTGGAAGCCTTACTTTAATTGGTGGAAGTCCAGGTGTTGGAAAATCTACACTTTT
ATTAAAAGTTGCTGGAAGTATCTCAAAATCGGGGAAAAAAGTTTTATACGTTTCAGGCGAAGAAAGTGCTGGGCAAATAA
AACTGCGAGCAAATAGACTTGATGCAAACCATAATGACTTATTTTTATTAAGTGAAATAAAACTTGAAGAGATTCAAGAT
GAACTTTTAAGACAAAATTATGAAGTTGTAATTATTGACTCAATTCAAACTATTTATTCATCAAATCTTACATCAGCTCC
GGGAAGTGTTTCACAAGTGAGAGAAATCACTTTTGAACTAATGAGAAAAGCAAAAGAGTCAAATATTGCTATGTTTATAA
TCGGTCACATTACAAAAGATGGAAGTATTGCAGGTCCTAGAGTTCTTGAACACATGGTTGATACGGTTTTATATTTTGAA
GGAGAAGCAAGTCGTGAACTGAGAATGCTTAGAGGTTTTAAAAATAGATTTGGAAGTACCAGTGAAATTGGTATTTTTGA
AATGACGGCAGAAGGATTAATAAGTGCAAAAGATATCGCTTCAAAGTTTTTTGATAAATCAAAAGCCCAAAGTGGTTCAG
CTCTTACAGTTGTTATGGAGGGAAGCCGTGCTATAATTTTGGAAGTTCAAGCACTTGTAACTGAAAGCACTTACCCAAAC
CCAAAAAGAAGTGCCACAGGTTTTGATGCAAATAGACTTACTATGCTTTTAGCTTTACTTGAAAAAAAGATTGATTTACC
ACTAAATAACTATGATGTTTTTATAAACATAAGTGGTGGAATAAAAATCAAAGAAAGTAGTGCAGATTTAGCTGTGATTG
CAGCGATAATATCTTCTTATAGAGATAGACCTATTTCAAAAGAGTCAGCATTTATTGGAGAAGTTTCACTAACTGGTGAA
ATAAAAGATGTTTATTCTATTGATTTGCGACTAAAAGAAGCACAAGCACAAGGTATGAAAAAAGCAGTAATTGCTCAAAA
AACAAATTTGAAACTTGATATAAAAACTTATGCAGTTGATGAAGTTTCTAAAATGATAGAACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.465

95.768

0.483
  radA Streptococcus mitis NCTC 12261

49.188

95.991

0.472
  radA Streptococcus mitis SK321

49.188

95.991

0.472
  radA Streptococcus pneumoniae Rx1

49.188

95.991

0.472
  radA Streptococcus pneumoniae D39

49.188

95.991

0.472
  radA Streptococcus pneumoniae R6

49.188

95.991

0.472
  radA Streptococcus pneumoniae TIGR4

49.188

95.991

0.472

Multiple sequence alignment